char *git_replace_ref_base;
 enum eol core_eol = EOL_UNSET;
 int global_conv_flags_eol = CONV_EOL_RNDTRP_WARN;
+char *check_roundtrip_encoding = "SHIFT-JIS";
 unsigned whitespace_rule_cfg = WS_DEFAULT_RULE;
 enum branch_track git_branch_track = BRANCH_TRACK_REMOTE;
 enum rebase_setup_type autorebase = AUTOREBASE_NEVER;
 enum object_creation_mode object_creation_mode = OBJECT_CREATION_MODE;
 char *notes_ref_name;
 int grafts_replace_parents = 1;
-int core_commit_graph;
 int core_apply_sparse_checkout;
 int merge_log_config = -1;
 int precomposed_unicode = -1; /* see probe_utf8_pathname_composition() */
        git_namespace = expand_namespace(getenv(GIT_NAMESPACE_ENVIRONMENT));
        shallow_file = getenv(GIT_SHALLOW_FILE_ENVIRONMENT);
        if (shallow_file)
-               set_alternate_shallow_file(shallow_file, 0);
+               set_alternate_shallow_file(the_repository, shallow_file, 0);
 }
 
 int is_bare_repository(void)
        return the_repository->index_file;
 }
 
-char *get_graft_file(void)
+char *get_graft_file(struct repository *r)
 {
-       if (!the_repository->graft_file)
+       if (!r->graft_file)
                BUG("git environment hasn't been setup");
-       return the_repository->graft_file;
+       return r->graft_file;
 }
 
 static void set_git_dir_1(const char *path)