git-commit: Allow partial commit of file removal.
[gitweb.git] / builtin-apply.c
index bec95d6c8aa60ac40718f52da5a8f9603330dadb..5ad371424b8019a97d1fb34045bb8e32134870aa 100644 (file)
@@ -28,8 +28,9 @@ static int newfd = -1;
 
 static int unidiff_zero;
 static int p_value = 1;
+static int p_value_known;
 static int check_index;
-static int write_index;
+static int update_index;
 static int cached;
 static int diffstat;
 static int numstat;
@@ -54,7 +55,7 @@ static enum whitespace_eol {
 } new_whitespace = warn_on_whitespace;
 static int whitespace_error;
 static int squelch_whitespace_errors = 5;
-static int applied_after_stripping;
+static int applied_after_fixing_ws;
 static const char *patch_input_file;
 
 static void parse_whitespace_option(const char *option)
@@ -144,6 +145,7 @@ struct patch {
        unsigned long deflate_origlen;
        int lines_added, lines_deleted;
        int score;
+       unsigned int is_toplevel_relative:1;
        unsigned int inaccurate_eof:1;
        unsigned int is_binary:1;
        unsigned int is_copy:1;
@@ -183,7 +185,7 @@ static void *read_patch_file(int fd, unsigned long *sizep)
        void *buffer = xmalloc(alloc);
 
        for (;;) {
-               int nr = alloc - size;
+               ssize_t nr = alloc - size;
                if (nr < 1024) {
                        alloc += CHUNKSIZE;
                        buffer = xrealloc(buffer, alloc);
@@ -238,7 +240,7 @@ static int name_terminate(const char *name, int namelen, int c, int terminate)
        return 1;
 }
 
-static char * find_name(const char *line, char *def, int p_value, int terminate)
+static char *find_name(const char *line, char *def, int p_value, int terminate)
 {
        int len;
        const char *start = line;
@@ -311,11 +313,54 @@ static char * find_name(const char *line, char *def, int p_value, int terminate)
        return name;
 }
 
+static int count_slashes(const char *cp)
+{
+       int cnt = 0;
+       char ch;
+
+       while ((ch = *cp++))
+               if (ch == '/')
+                       cnt++;
+       return cnt;
+}
+
+/*
+ * Given the string after "--- " or "+++ ", guess the appropriate
+ * p_value for the given patch.
+ */
+static int guess_p_value(const char *nameline)
+{
+       char *name, *cp;
+       int val = -1;
+
+       if (is_dev_null(nameline))
+               return -1;
+       name = find_name(nameline, NULL, 0, TERM_SPACE | TERM_TAB);
+       if (!name)
+               return -1;
+       cp = strchr(name, '/');
+       if (!cp)
+               val = 0;
+       else if (prefix) {
+               /*
+                * Does it begin with "a/$our-prefix" and such?  Then this is
+                * very likely to apply to our directory.
+                */
+               if (!strncmp(name, prefix, prefix_length))
+                       val = count_slashes(prefix);
+               else {
+                       cp++;
+                       if (!strncmp(cp, prefix, prefix_length))
+                               val = count_slashes(prefix) + 1;
+               }
+       }
+       free(name);
+       return val;
+}
+
 /*
  * Get the name etc info from the --/+++ lines of a traditional patch header
  *
- * NOTE! This hardcodes "-p1" behaviour in filename detection.
- *
  * FIXME! The end-of-filename heuristics are kind of screwy. For existing
  * files, we can happily check the index for a match, but for creating a
  * new file we should try to match whatever "patch" does. I have no idea.
@@ -326,6 +371,16 @@ static void parse_traditional_patch(const char *first, const char *second, struc
 
        first += 4;     /* skip "--- " */
        second += 4;    /* skip "+++ " */
+       if (!p_value_known) {
+               int p, q;
+               p = guess_p_value(first);
+               q = guess_p_value(second);
+               if (p < 0) p = q;
+               if (0 <= p && p == q) {
+                       p_value = p;
+                       p_value_known = 1;
+               }
+       }
        if (is_dev_null(first)) {
                patch->is_new = 1;
                patch->is_delete = 0;
@@ -362,7 +417,7 @@ static int gitdiff_hdrend(const char *line, struct patch *patch)
 static char *gitdiff_verify_name(const char *line, int isnull, char *orig_name, const char *oldnew)
 {
        if (!orig_name && !isnull)
-               return find_name(line, NULL, 1, TERM_TAB);
+               return find_name(line, NULL, p_value, TERM_TAB);
 
        if (orig_name) {
                int len;
@@ -372,7 +427,7 @@ static char *gitdiff_verify_name(const char *line, int isnull, char *orig_name,
                len = strlen(name);
                if (isnull)
                        die("git-apply: bad git-diff - expected /dev/null, got %s on line %d", name, linenr);
-               another = find_name(line, NULL, 1, TERM_TAB);
+               another = find_name(line, NULL, p_value, TERM_TAB);
                if (!another || memcmp(another, name, len))
                        die("git-apply: bad git-diff - inconsistent %s filename on line %d", oldnew, linenr);
                free(another);
@@ -787,6 +842,7 @@ static int find_header(char *line, unsigned long size, int *hdrsize, struct patc
 {
        unsigned long offset, len;
 
+       patch->is_toplevel_relative = 0;
        patch->is_rename = patch->is_copy = 0;
        patch->is_new = patch->is_delete = -1;
        patch->old_mode = patch->new_mode = 0;
@@ -831,6 +887,7 @@ static int find_header(char *line, unsigned long size, int *hdrsize, struct patc
                                        die("git diff header lacks filename information (line %d)", linenr);
                                patch->old_name = patch->new_name = patch->def_name;
                        }
+                       patch->is_toplevel_relative = 1;
                        *hdrsize = git_hdr_len;
                        return offset;
                }
@@ -946,12 +1003,16 @@ static int parse_fragment(char *line, unsigned long size, struct patch *patch, s
                        trailing++;
                        break;
                case '-':
+                       if (apply_in_reverse &&
+                                       new_whitespace != nowarn_whitespace)
+                               check_whitespace(line, len);
                        deleted++;
                        oldlines--;
                        trailing = 0;
                        break;
                case '+':
-                       if (new_whitespace != nowarn_whitespace)
+                       if (!apply_in_reverse &&
+                                       new_whitespace != nowarn_whitespace)
                                check_whitespace(line, len);
                        added++;
                        newlines--;
@@ -1129,11 +1190,11 @@ static struct fragment *parse_binary_hunk(char **buf_p,
 
        *status_p = 0;
 
-       if (!strncmp(buffer, "delta ", 6)) {
+       if (!prefixcmp(buffer, "delta ")) {
                patch_method = BINARY_DELTA_DEFLATED;
                origlen = strtoul(buffer + 6, NULL, 10);
        }
-       else if (!strncmp(buffer, "literal ", 8)) {
+       else if (!prefixcmp(buffer, "literal ")) {
                patch_method = BINARY_LITERAL_DEFLATED;
                origlen = strtoul(buffer + 8, NULL, 10);
        }
@@ -1393,28 +1454,39 @@ static void show_stats(struct patch *patch)
        free(qname);
 }
 
-static int read_old_data(struct stat *st, const char *path, void *buf, unsigned long size)
+static int read_old_data(struct stat *st, const char *path, char **buf_p, unsigned long *alloc_p, unsigned long *size_p)
 {
        int fd;
        unsigned long got;
+       unsigned long nsize;
+       char *nbuf;
+       unsigned long size = *size_p;
+       char *buf = *buf_p;
 
        switch (st->st_mode & S_IFMT) {
        case S_IFLNK:
-               return readlink(path, buf, size);
+               return readlink(path, buf, size) != size;
        case S_IFREG:
                fd = open(path, O_RDONLY);
                if (fd < 0)
                        return error("unable to open %s", path);
                got = 0;
                for (;;) {
-                       int ret = xread(fd, (char *) buf + got, size - got);
+                       ssize_t ret = xread(fd, buf + got, size - got);
                        if (ret <= 0)
                                break;
                        got += ret;
                }
                close(fd);
-               return got;
-
+               nsize = got;
+               nbuf = convert_to_git(path, buf, &nsize);
+               if (nbuf) {
+                       free(buf);
+                       *buf_p = nbuf;
+                       *alloc_p = nsize;
+                       *size_p = nsize;
+               }
+               return got != size;
        default:
                return -1;
        }
@@ -1442,7 +1514,8 @@ static int find_offset(const char *buf, unsigned long size, const char *fragment
        }
 
        /* Exact line number? */
-       if (!memcmp(buf + start, fragment, fragsize))
+       if ((start + fragsize <= size) &&
+           !memcmp(buf + start, fragment, fragsize))
                return start;
 
        /*
@@ -1569,15 +1642,22 @@ static int apply_line(char *output, const char *patch, int plen)
 
        buf = output;
        if (need_fix_leading_space) {
+               int consecutive_spaces = 0;
                /* between patch[1..last_tab_in_indent] strip the
                 * funny spaces, updating them to tab as needed.
                 */
                for (i = 1; i < last_tab_in_indent; i++, plen--) {
                        char ch = patch[i];
-                       if (ch != ' ')
+                       if (ch != ' ') {
+                               consecutive_spaces = 0;
                                *output++ = ch;
-                       else if ((i % 8) == 0)
-                               *output++ = '\t';
+                       } else {
+                               consecutive_spaces++;
+                               if (consecutive_spaces == 8) {
+                                       *output++ = '\t';
+                                       consecutive_spaces = 0;
+                               }
+                       }
                }
                fixed = 1;
                i = last_tab_in_indent;
@@ -1589,7 +1669,7 @@ static int apply_line(char *output, const char *patch, int plen)
        if (add_nl_to_tail)
                output[plen++] = '\n';
        if (fixed)
-               applied_after_stripping++;
+               applied_after_fixing_ws++;
        return output + plen - buf;
 }
 
@@ -1603,6 +1683,7 @@ static int apply_one_fragment(struct buffer_desc *desc, struct fragment *frag, i
        char *new = xmalloc(size);
        const char *oldlines, *newlines;
        int oldsize = 0, newsize = 0;
+       int new_blank_lines_at_end = 0;
        unsigned long leading, trailing;
        int pos, lines;
 
@@ -1610,6 +1691,7 @@ static int apply_one_fragment(struct buffer_desc *desc, struct fragment *frag, i
                char first;
                int len = linelen(patch, size);
                int plen;
+               int added_blank_line = 0;
 
                if (!len)
                        break;
@@ -1631,6 +1713,7 @@ static int apply_one_fragment(struct buffer_desc *desc, struct fragment *frag, i
                        else if (first == '+')
                                first = '-';
                }
+
                switch (first) {
                case '\n':
                        /* Newer GNU diff, empty context line */
@@ -1648,16 +1731,27 @@ static int apply_one_fragment(struct buffer_desc *desc, struct fragment *frag, i
                                break;
                /* Fall-through for ' ' */
                case '+':
-                       if (first != '+' || !no_add)
-                               newsize += apply_line(new + newsize, patch,
-                                                     plen);
+                       if (first != '+' || !no_add) {
+                               int added = apply_line(new + newsize, patch,
+                                                      plen);
+                               newsize += added;
+                               if (first == '+' &&
+                                   added == 1 && new[newsize-1] == '\n')
+                                       added_blank_line = 1;
+                       }
                        break;
                case '@': case '\\':
                        /* Ignore it, we already handled it */
                        break;
                default:
+                       if (apply_verbosely)
+                               error("invalid start of line: '%c'", first);
                        return -1;
                }
+               if (added_blank_line)
+                       new_blank_lines_at_end++;
+               else
+                       new_blank_lines_at_end = 0;
                patch += len;
                size -= len;
        }
@@ -1700,9 +1794,16 @@ static int apply_one_fragment(struct buffer_desc *desc, struct fragment *frag, i
                if (match_beginning && offset)
                        offset = -1;
                if (offset >= 0) {
-                       int diff = newsize - oldsize;
-                       unsigned long size = desc->size + diff;
-                       unsigned long alloc = desc->alloc;
+                       int diff;
+                       unsigned long size, alloc;
+
+                       if (new_whitespace == strip_whitespace &&
+                           (desc->size - oldsize - offset == 0)) /* end of file? */
+                               newsize -= new_blank_lines_at_end;
+
+                       diff = newsize - oldsize;
+                       size = desc->size + diff;
+                       alloc = desc->alloc;
 
                        /* Warn if it was necessary to reduce the number
                         * of context lines.
@@ -1753,6 +1854,9 @@ static int apply_one_fragment(struct buffer_desc *desc, struct fragment *frag, i
                }
        }
 
+       if (offset && apply_verbosely)
+               error("while searching for:\n%.*s", oldsize, oldlines);
+
        free(old);
        free(new);
        return offset;
@@ -1839,11 +1943,11 @@ static int apply_binary(struct buffer_desc *desc, struct patch *patch)
 
        if (has_sha1_file(sha1)) {
                /* We already have the postimage */
-               char type[10];
+               enum object_type type;
                unsigned long size;
 
                free(desc->buffer);
-               desc->buffer = read_sha1_file(sha1, type, &size);
+               desc->buffer = read_sha1_file(sha1, &type, &size);
                if (!desc->buffer)
                        return error("the necessary postimage %s for "
                                     "'%s' cannot be read",
@@ -1888,6 +1992,25 @@ static int apply_fragments(struct buffer_desc *desc, struct patch *patch)
        return 0;
 }
 
+static int read_file_or_gitlink(struct cache_entry *ce, char **buf_p,
+                               unsigned long *size_p)
+{
+       if (!ce)
+               return 0;
+
+       if (S_ISGITLINK(ntohl(ce->ce_mode))) {
+               *buf_p = xmalloc(100);
+               *size_p = snprintf(*buf_p, 100,
+                       "Subproject commit %s\n", sha1_to_hex(ce->sha1));
+       } else {
+               enum object_type type;
+               *buf_p = read_sha1_file(ce->sha1, &type, size_p);
+               if (!*buf_p)
+                       return -1;
+       }
+       return 0;
+}
+
 static int apply_data(struct patch *patch, struct stat *st, struct cache_entry *ce)
 {
        char *buf;
@@ -1898,22 +2021,32 @@ static int apply_data(struct patch *patch, struct stat *st, struct cache_entry *
        alloc = 0;
        buf = NULL;
        if (cached) {
-               if (ce) {
-                       char type[20];
-                       buf = read_sha1_file(ce->sha1, type, &size);
-                       if (!buf)
+               if (read_file_or_gitlink(ce, &buf, &size))
+                       return error("read of %s failed", patch->old_name);
+               alloc = size;
+       } else if (patch->old_name) {
+               if (S_ISGITLINK(patch->old_mode)) {
+                       if (ce)
+                               read_file_or_gitlink(ce, &buf, &size);
+                       else {
+                               /*
+                                * There is no way to apply subproject
+                                * patch without looking at the index.
+                                */
+                               patch->fragments = NULL;
+                               size = 0;
+                       }
+               }
+               else {
+                       size = xsize_t(st->st_size);
+                       alloc = size + 8192;
+                       buf = xmalloc(alloc);
+                       if (read_old_data(st, patch->old_name,
+                                         &buf, &alloc, &size))
                                return error("read of %s failed",
                                             patch->old_name);
-                       alloc = size;
                }
        }
-       else if (patch->old_name) {
-               size = st->st_size;
-               alloc = size + 8192;
-               buf = xmalloc(alloc);
-               if (read_old_data(st, patch->old_name, buf, alloc) != size)
-                       return error("read of %s failed", patch->old_name);
-       }
 
        desc.size = size;
        desc.alloc = alloc;
@@ -1936,6 +2069,39 @@ static int apply_data(struct patch *patch, struct stat *st, struct cache_entry *
        return 0;
 }
 
+static int check_to_create_blob(const char *new_name, int ok_if_exists)
+{
+       struct stat nst;
+       if (!lstat(new_name, &nst)) {
+               if (S_ISDIR(nst.st_mode) || ok_if_exists)
+                       return 0;
+               /*
+                * A leading component of new_name might be a symlink
+                * that is going to be removed with this patch, but
+                * still pointing at somewhere that has the path.
+                * In such a case, path "new_name" does not exist as
+                * far as git is concerned.
+                */
+               if (has_symlink_leading_path(new_name, NULL))
+                       return 0;
+
+               return error("%s: already exists in working directory", new_name);
+       }
+       else if ((errno != ENOENT) && (errno != ENOTDIR))
+               return error("%s: %s", new_name, strerror(errno));
+       return 0;
+}
+
+static int verify_index_match(struct cache_entry *ce, struct stat *st)
+{
+       if (S_ISGITLINK(ntohl(ce->ce_mode))) {
+               if (!S_ISDIR(st->st_mode))
+                       return -1;
+               return 0;
+       }
+       return ce_match_stat(ce, st, 1);
+}
+
 static int check_patch(struct patch *patch, struct patch *prev_patch)
 {
        struct stat st;
@@ -1946,8 +2112,14 @@ static int check_patch(struct patch *patch, struct patch *prev_patch)
        int ok_if_exists;
 
        patch->rejected = 1; /* we will drop this after we succeed */
+
+       /*
+        * Make sure that we do not have local modifications from the
+        * index when we are looking at the index.  Also make sure
+        * we have the preimage file to be patched in the work tree,
+        * unless --cached, which tells git to apply only in the index.
+        */
        if (old_name) {
-               int changed = 0;
                int stat_ret = 0;
                unsigned st_mode = 0;
 
@@ -1977,15 +2149,12 @@ static int check_patch(struct patch *patch, struct patch *prev_patch)
                                    lstat(old_name, &st))
                                        return -1;
                        }
-                       if (!cached)
-                               changed = ce_match_stat(ce, &st, 1);
-                       if (changed)
+                       if (!cached && verify_index_match(ce, &st))
                                return error("%s: does not match index",
                                             old_name);
                        if (cached)
                                st_mode = ntohl(ce->ce_mode);
-               }
-               else if (stat_ret < 0)
+               } else if (stat_ret < 0)
                        return error("%s: %s", old_name, strerror(errno));
 
                if (!cached)
@@ -2022,15 +2191,9 @@ static int check_patch(struct patch *patch, struct patch *prev_patch)
                    !ok_if_exists)
                        return error("%s: already exists in index", new_name);
                if (!cached) {
-                       struct stat nst;
-                       if (!lstat(new_name, &nst)) {
-                               if (S_ISDIR(nst.st_mode) || ok_if_exists)
-                                       ; /* ok */
-                               else
-                                       return error("%s: already exists in working directory", new_name);
-                       }
-                       else if ((errno != ENOENT) && (errno != ENOTDIR))
-                               return error("%s: %s", new_name, strerror(errno));
+                       int err = check_to_create_blob(new_name, ok_if_exists);
+                       if (err)
+                               return err;
                }
                if (!patch->new_mode) {
                        if (0 < patch->is_new)
@@ -2071,6 +2234,20 @@ static int check_patch_list(struct patch *patch)
        return err;
 }
 
+/* This function tries to read the sha1 from the current index */
+static int get_current_sha1(const char *path, unsigned char *sha1)
+{
+       int pos;
+
+       if (read_cache() < 0)
+               return -1;
+       pos = cache_name_pos(path, strlen(path));
+       if (pos < 0)
+               return -1;
+       hashcpy(sha1, active_cache[pos]->sha1);
+       return 0;
+}
+
 static void show_index_list(struct patch *list)
 {
        struct patch *patch;
@@ -2087,8 +2264,16 @@ static void show_index_list(struct patch *list)
                if (0 < patch->is_new)
                        sha1_ptr = null_sha1;
                else if (get_sha1(patch->old_sha1_prefix, sha1))
-                       die("sha1 information is lacking or useless (%s).",
-                           name);
+                       /* git diff has no index line for mode/type changes */
+                       if (!patch->lines_added && !patch->lines_deleted) {
+                               if (get_current_sha1(patch->new_name, sha1) ||
+                                   get_current_sha1(patch->old_name, sha1))
+                                       die("mode change for %s, which is not "
+                                               "in current HEAD", name);
+                               sha1_ptr = sha1;
+                       } else
+                               die("sha1 information is lacking or useless "
+                                       "(%s).", name);
                else
                        sha1_ptr = sha1;
 
@@ -2233,15 +2418,19 @@ static void patch_stats(struct patch *patch)
        }
 }
 
-static void remove_file(struct patch *patch)
+static void remove_file(struct patch *patch, int rmdir_empty)
 {
-       if (write_index) {
+       if (update_index) {
                if (remove_file_from_cache(patch->old_name) < 0)
                        die("unable to remove %s from index", patch->old_name);
                cache_tree_invalidate_path(active_cache_tree, patch->old_name);
        }
        if (!cached) {
-               if (!unlink(patch->old_name)) {
+               if (S_ISGITLINK(patch->old_mode)) {
+                       if (rmdir(patch->old_name))
+                               warning("unable to remove submodule %s",
+                                       patch->old_name);
+               } else if (!unlink(patch->old_name) && rmdir_empty) {
                        char *name = xstrdup(patch->old_name);
                        char *end = strrchr(name, '/');
                        while (end) {
@@ -2262,20 +2451,28 @@ static void add_index_file(const char *path, unsigned mode, void *buf, unsigned
        int namelen = strlen(path);
        unsigned ce_size = cache_entry_size(namelen);
 
-       if (!write_index)
+       if (!update_index)
                return;
 
        ce = xcalloc(1, ce_size);
        memcpy(ce->name, path, namelen);
        ce->ce_mode = create_ce_mode(mode);
        ce->ce_flags = htons(namelen);
-       if (!cached) {
-               if (lstat(path, &st) < 0)
-                       die("unable to stat newly created file %s", path);
-               fill_stat_cache_info(ce, &st);
+       if (S_ISGITLINK(mode)) {
+               const char *s = buf;
+
+               if (get_sha1_hex(s + strlen("Subproject commit "), ce->sha1))
+                       die("corrupt patch for subproject %s", path);
+       } else {
+               if (!cached) {
+                       if (lstat(path, &st) < 0)
+                               die("unable to stat newly created file %s",
+                                   path);
+                       fill_stat_cache_info(ce, &st);
+               }
+               if (write_sha1_file(buf, size, blob_type, ce->sha1) < 0)
+                       die("unable to create backing store for newly created file %s", path);
        }
-       if (write_sha1_file(buf, size, blob_type, ce->sha1) < 0)
-               die("unable to create backing store for newly created file %s", path);
        if (add_cache_entry(ce, ADD_CACHE_OK_TO_ADD) < 0)
                die("unable to add cache entry for %s", path);
 }
@@ -2283,15 +2480,29 @@ static void add_index_file(const char *path, unsigned mode, void *buf, unsigned
 static int try_create_file(const char *path, unsigned int mode, const char *buf, unsigned long size)
 {
        int fd;
+       char *nbuf;
 
-       if (S_ISLNK(mode))
+       if (S_ISGITLINK(mode)) {
+               struct stat st;
+               if (!lstat(path, &st) && S_ISDIR(st.st_mode))
+                       return 0;
+               return mkdir(path, 0777);
+       }
+
+       if (has_symlinks && S_ISLNK(mode))
                /* Although buf:size is counted string, it also is NUL
                 * terminated.
                 */
                return symlink(buf, path);
+
        fd = open(path, O_CREAT | O_EXCL | O_WRONLY, (mode & 0100) ? 0777 : 0666);
        if (fd < 0)
                return -1;
+
+       nbuf = convert_to_working_tree(path, buf, &size);
+       if (nbuf)
+               buf = nbuf;
+
        while (size) {
                int written = xwrite(fd, buf, size);
                if (written < 0)
@@ -2303,6 +2514,8 @@ static int try_create_file(const char *path, unsigned int mode, const char *buf,
        }
        if (close(fd) < 0)
                die("closing file %s: %s", path, strerror(errno));
+       if (nbuf)
+               free(nbuf);
        return 0;
 }
 
@@ -2330,8 +2543,7 @@ static void create_one_file(char *path, unsigned mode, const char *buf, unsigned
                 * used to be.
                 */
                struct stat st;
-               errno = 0;
-               if (!lstat(path, &st) && S_ISDIR(st.st_mode) && !rmdir(path))
+               if (!lstat(path, &st) && (!S_ISDIR(st.st_mode) || !rmdir(path)))
                        errno = EEXIST;
        }
 
@@ -2374,7 +2586,7 @@ static void write_out_one_result(struct patch *patch, int phase)
 {
        if (patch->is_delete > 0) {
                if (phase == 0)
-                       remove_file(patch);
+                       remove_file(patch, 1);
                return;
        }
        if (patch->is_new > 0 || patch->is_copy) {
@@ -2387,7 +2599,7 @@ static void write_out_one_result(struct patch *patch, int phase)
         * thing: remove the old, write the new
         */
        if (phase == 0)
-               remove_file(patch);
+               remove_file(patch, patch->is_rename);
        if (phase == 1)
                create_file(patch);
 }
@@ -2509,6 +2721,32 @@ static int use_patch(struct patch *p)
        return 1;
 }
 
+static void prefix_one(char **name)
+{
+       char *old_name = *name;
+       if (!old_name)
+               return;
+       *name = xstrdup(prefix_filename(prefix, prefix_length, *name));
+       free(old_name);
+}
+
+static void prefix_patches(struct patch *p)
+{
+       if (!prefix || p->is_toplevel_relative)
+               return;
+       for ( ; p; p = p->next) {
+               if (p->new_name == p->old_name) {
+                       char *prefixed = p->new_name;
+                       prefix_one(&prefixed);
+                       p->new_name = p->old_name = prefixed;
+               }
+               else {
+                       prefix_one(&p->new_name);
+                       prefix_one(&p->old_name);
+               }
+       }
+}
+
 static int apply_patch(int fd, const char *filename, int inaccurate_eof)
 {
        unsigned long offset, size;
@@ -2531,11 +2769,14 @@ static int apply_patch(int fd, const char *filename, int inaccurate_eof)
                        break;
                if (apply_in_reverse)
                        reverse_patches(patch);
+               if (prefix)
+                       prefix_patches(patch);
                if (use_patch(patch)) {
                        patch_stats(patch);
                        *listp = patch;
                        listp = &patch->next;
-               } else {
+               }
+               else {
                        /* perhaps free it a bit better? */
                        free(patch);
                        skipped_patch++;
@@ -2547,10 +2788,10 @@ static int apply_patch(int fd, const char *filename, int inaccurate_eof)
        if (whitespace_error && (new_whitespace == error_on_whitespace))
                apply = 0;
 
-       write_index = check_index && apply;
-       if (write_index && newfd < 0)
-               newfd = hold_lock_file_for_update(&lock_file,
-                                                 get_index_file(), 1);
+       update_index = check_index && apply;
+       if (update_index && newfd < 0)
+               newfd = hold_locked_index(&lock_file, 1);
+
        if (check_index) {
                if (read_cache() < 0)
                        die("unable to read index file");
@@ -2596,9 +2837,16 @@ int cmd_apply(int argc, const char **argv, const char *unused_prefix)
        int read_stdin = 1;
        int inaccurate_eof = 0;
        int errs = 0;
+       int is_not_gitdir = 0;
 
        const char *whitespace_option = NULL;
 
+       prefix = setup_git_directory_gently(&is_not_gitdir);
+       prefix_length = prefix ? strlen(prefix) : 0;
+       git_config(git_apply_config);
+       if (apply_default_whitespace)
+               parse_whitespace_option(apply_default_whitespace);
+
        for (i = 1; i < argc; i++) {
                const char *arg = argv[i];
                char *end;
@@ -2609,15 +2857,16 @@ int cmd_apply(int argc, const char **argv, const char *unused_prefix)
                        read_stdin = 0;
                        continue;
                }
-               if (!strncmp(arg, "--exclude=", 10)) {
+               if (!prefixcmp(arg, "--exclude=")) {
                        struct excludes *x = xmalloc(sizeof(*x));
                        x->path = arg + 10;
                        x->next = excludes;
                        excludes = x;
                        continue;
                }
-               if (!strncmp(arg, "-p", 2)) {
+               if (!prefixcmp(arg, "-p")) {
                        p_value = atoi(arg + 2);
+                       p_value_known = 1;
                        continue;
                }
                if (!strcmp(arg, "--no-add")) {
@@ -2649,10 +2898,14 @@ int cmd_apply(int argc, const char **argv, const char *unused_prefix)
                        continue;
                }
                if (!strcmp(arg, "--index")) {
+                       if (is_not_gitdir)
+                               die("--index outside a repository");
                        check_index = 1;
                        continue;
                }
                if (!strcmp(arg, "--cached")) {
+                       if (is_not_gitdir)
+                               die("--cached outside a repository");
                        check_index = 1;
                        cached = 1;
                        continue;
@@ -2670,13 +2923,13 @@ int cmd_apply(int argc, const char **argv, const char *unused_prefix)
                        line_termination = 0;
                        continue;
                }
-               if (!strncmp(arg, "-C", 2)) {
+               if (!prefixcmp(arg, "-C")) {
                        p_context = strtoul(arg + 2, &end, 0);
                        if (*end != '\0')
                                die("unrecognized context count '%s'", arg + 2);
                        continue;
                }
-               if (!strncmp(arg, "--whitespace=", 13)) {
+               if (!prefixcmp(arg, "--whitespace=")) {
                        whitespace_option = arg + 13;
                        parse_whitespace_option(arg + 13);
                        continue;
@@ -2693,7 +2946,7 @@ int cmd_apply(int argc, const char **argv, const char *unused_prefix)
                        apply = apply_with_reject = apply_verbosely = 1;
                        continue;
                }
-               if (!strcmp(arg, "--verbose")) {
+               if (!strcmp(arg, "-v") || !strcmp(arg, "--verbose")) {
                        apply_verbosely = 1;
                        continue;
                }
@@ -2701,14 +2954,6 @@ int cmd_apply(int argc, const char **argv, const char *unused_prefix)
                        inaccurate_eof = 1;
                        continue;
                }
-
-               if (check_index && prefix_length < 0) {
-                       prefix = setup_git_directory();
-                       prefix_length = prefix ? strlen(prefix) : 0;
-                       git_config(git_apply_config);
-                       if (!whitespace_option && apply_default_whitespace)
-                               parse_whitespace_option(apply_default_whitespace);
-               }
                if (0 < prefix_length)
                        arg = prefix_filename(prefix, prefix_length, arg);
 
@@ -2734,26 +2979,25 @@ int cmd_apply(int argc, const char **argv, const char *unused_prefix)
                                squelched == 1 ? "" : "s");
                }
                if (new_whitespace == error_on_whitespace)
-                       die("%d line%s add%s trailing whitespaces.",
+                       die("%d line%s add%s whitespace errors.",
                            whitespace_error,
                            whitespace_error == 1 ? "" : "s",
                            whitespace_error == 1 ? "s" : "");
-               if (applied_after_stripping)
+               if (applied_after_fixing_ws)
                        fprintf(stderr, "warning: %d line%s applied after"
-                               " stripping trailing whitespaces.\n",
-                               applied_after_stripping,
-                               applied_after_stripping == 1 ? "" : "s");
+                               " fixing whitespace errors.\n",
+                               applied_after_fixing_ws,
+                               applied_after_fixing_ws == 1 ? "" : "s");
                else if (whitespace_error)
-                       fprintf(stderr, "warning: %d line%s add%s trailing"
-                               " whitespaces.\n",
+                       fprintf(stderr, "warning: %d line%s add%s whitespace errors.\n",
                                whitespace_error,
                                whitespace_error == 1 ? "" : "s",
                                whitespace_error == 1 ? "s" : "");
        }
 
-       if (write_index) {
+       if (update_index) {
                if (write_cache(newfd, active_cache, active_nr) ||
-                   close(newfd) || commit_lock_file(&lock_file))
+                   close(newfd) || commit_locked_index(&lock_file))
                        die("Unable to write new index file");
        }