commit-graph: implement write_commit_graph()

Teach Git to write a commit graph file by checking all packed objects
to see if they are commits, then store the file in the given object
directory.

Helped-by: Jeff King <peff@peff.net>
Signed-off-by: Derrick Stolee <dstolee@microsoft.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>