ewah / ewok.hon commit config.mak.uname: set FREAD_READS_DIRECTORIES for Linux and FreeBSD (e2d90fd)
   1/**
   2 * Copyright 2013, GitHub, Inc
   3 * Copyright 2009-2013, Daniel Lemire, Cliff Moon,
   4 *      David McIntosh, Robert Becho, Google Inc. and Veronika Zenz
   5 *
   6 * This program is free software; you can redistribute it and/or
   7 * modify it under the terms of the GNU General Public License
   8 * as published by the Free Software Foundation; either version 2
   9 * of the License, or (at your option) any later version.
  10 *
  11 * This program is distributed in the hope that it will be useful,
  12 * but WITHOUT ANY WARRANTY; without even the implied warranty of
  13 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
  14 * GNU General Public License for more details.
  15 *
  16 * You should have received a copy of the GNU General Public License
  17 * along with this program; if not, write to the Free Software
  18 * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301, USA.
  19 */
  20#ifndef __EWOK_BITMAP_H__
  21#define __EWOK_BITMAP_H__
  22
  23struct strbuf;
  24typedef uint64_t eword_t;
  25#define BITS_IN_EWORD (sizeof(eword_t) * 8)
  26
  27/**
  28 * Do not use __builtin_popcountll. The GCC implementation
  29 * is notoriously slow on all platforms.
  30 *
  31 * See: http://gcc.gnu.org/bugzilla/show_bug.cgi?id=36041
  32 */
  33static inline uint32_t ewah_bit_popcount64(uint64_t x)
  34{
  35        x = (x & 0x5555555555555555ULL) + ((x >>  1) & 0x5555555555555555ULL);
  36        x = (x & 0x3333333333333333ULL) + ((x >>  2) & 0x3333333333333333ULL);
  37        x = (x & 0x0F0F0F0F0F0F0F0FULL) + ((x >>  4) & 0x0F0F0F0F0F0F0F0FULL);
  38        return (x * 0x0101010101010101ULL) >> 56;
  39}
  40
  41/* __builtin_ctzll was not available until 3.4.0 */
  42#if defined(__GNUC__) && (__GNUC__ > 3 || (__GNUC__ == 3  && __GNUC_MINOR > 3))
  43#define ewah_bit_ctz64(x) __builtin_ctzll(x)
  44#else
  45static inline int ewah_bit_ctz64(uint64_t x)
  46{
  47        int n = 0;
  48        if ((x & 0xffffffff) == 0) { x >>= 32; n += 32; }
  49        if ((x &     0xffff) == 0) { x >>= 16; n += 16; }
  50        if ((x &       0xff) == 0) { x >>=  8; n +=  8; }
  51        if ((x &        0xf) == 0) { x >>=  4; n +=  4; }
  52        if ((x &        0x3) == 0) { x >>=  2; n +=  2; }
  53        if ((x &        0x1) == 0) { x >>=  1; n +=  1; }
  54        return n + !x;
  55}
  56#endif
  57
  58struct ewah_bitmap {
  59        eword_t *buffer;
  60        size_t buffer_size;
  61        size_t alloc_size;
  62        size_t bit_size;
  63        eword_t *rlw;
  64};
  65
  66typedef void (*ewah_callback)(size_t pos, void *);
  67
  68struct ewah_bitmap *ewah_pool_new(void);
  69void ewah_pool_free(struct ewah_bitmap *self);
  70
  71/**
  72 * Allocate a new EWAH Compressed bitmap
  73 */
  74struct ewah_bitmap *ewah_new(void);
  75
  76/**
  77 * Clear all the bits in the bitmap. Does not free or resize
  78 * memory.
  79 */
  80void ewah_clear(struct ewah_bitmap *self);
  81
  82/**
  83 * Free all the memory of the bitmap
  84 */
  85void ewah_free(struct ewah_bitmap *self);
  86
  87int ewah_serialize_to(struct ewah_bitmap *self,
  88                      int (*write_fun)(void *out, const void *buf, size_t len),
  89                      void *out);
  90int ewah_serialize(struct ewah_bitmap *self, int fd);
  91int ewah_serialize_native(struct ewah_bitmap *self, int fd);
  92int ewah_serialize_strbuf(struct ewah_bitmap *self, struct strbuf *);
  93
  94int ewah_deserialize(struct ewah_bitmap *self, int fd);
  95int ewah_read_mmap(struct ewah_bitmap *self, const void *map, size_t len);
  96
  97uint32_t ewah_checksum(struct ewah_bitmap *self);
  98
  99/**
 100 * Logical not (bitwise negation) in-place on the bitmap
 101 *
 102 * This operation is linear time based on the size of the bitmap.
 103 */
 104void ewah_not(struct ewah_bitmap *self);
 105
 106/**
 107 * Call the given callback with the position of every single bit
 108 * that has been set on the bitmap.
 109 *
 110 * This is an efficient operation that does not fully decompress
 111 * the bitmap.
 112 */
 113void ewah_each_bit(struct ewah_bitmap *self, ewah_callback callback, void *payload);
 114
 115/**
 116 * Set a given bit on the bitmap.
 117 *
 118 * The bit at position `pos` will be set to true. Because of the
 119 * way that the bitmap is compressed, a set bit cannot be unset
 120 * later on.
 121 *
 122 * Furthermore, since the bitmap uses streaming compression, bits
 123 * can only set incrementally.
 124 *
 125 * E.g.
 126 *              ewah_set(bitmap, 1); // ok
 127 *              ewah_set(bitmap, 76); // ok
 128 *              ewah_set(bitmap, 77); // ok
 129 *              ewah_set(bitmap, 8712800127); // ok
 130 *              ewah_set(bitmap, 25); // failed, assert raised
 131 */
 132void ewah_set(struct ewah_bitmap *self, size_t i);
 133
 134struct ewah_iterator {
 135        const eword_t *buffer;
 136        size_t buffer_size;
 137
 138        size_t pointer;
 139        eword_t compressed, literals;
 140        eword_t rl, lw;
 141        int b;
 142};
 143
 144/**
 145 * Initialize a new iterator to run through the bitmap in uncompressed form.
 146 *
 147 * The iterator can be stack allocated. The underlying bitmap must not be freed
 148 * before the iteration is over.
 149 *
 150 * E.g.
 151 *
 152 *              struct ewah_bitmap *bitmap = ewah_new();
 153 *              struct ewah_iterator it;
 154 *
 155 *              ewah_iterator_init(&it, bitmap);
 156 */
 157void ewah_iterator_init(struct ewah_iterator *it, struct ewah_bitmap *parent);
 158
 159/**
 160 * Yield every single word in the bitmap in uncompressed form. This is:
 161 * yield single words (32-64 bits) where each bit represents an actual
 162 * bit from the bitmap.
 163 *
 164 * Return: true if a word was yield, false if there are no words left
 165 */
 166int ewah_iterator_next(eword_t *next, struct ewah_iterator *it);
 167
 168void ewah_or(
 169        struct ewah_bitmap *ewah_i,
 170        struct ewah_bitmap *ewah_j,
 171        struct ewah_bitmap *out);
 172
 173void ewah_and_not(
 174        struct ewah_bitmap *ewah_i,
 175        struct ewah_bitmap *ewah_j,
 176        struct ewah_bitmap *out);
 177
 178void ewah_xor(
 179        struct ewah_bitmap *ewah_i,
 180        struct ewah_bitmap *ewah_j,
 181        struct ewah_bitmap *out);
 182
 183void ewah_and(
 184        struct ewah_bitmap *ewah_i,
 185        struct ewah_bitmap *ewah_j,
 186        struct ewah_bitmap *out);
 187
 188/**
 189 * Direct word access
 190 */
 191size_t ewah_add_empty_words(struct ewah_bitmap *self, int v, size_t number);
 192void ewah_add_dirty_words(
 193        struct ewah_bitmap *self, const eword_t *buffer, size_t number, int negate);
 194size_t ewah_add(struct ewah_bitmap *self, eword_t word);
 195
 196
 197/**
 198 * Uncompressed, old-school bitmap that can be efficiently compressed
 199 * into an `ewah_bitmap`.
 200 */
 201struct bitmap {
 202        eword_t *words;
 203        size_t word_alloc;
 204};
 205
 206struct bitmap *bitmap_new(void);
 207void bitmap_set(struct bitmap *self, size_t pos);
 208void bitmap_clear(struct bitmap *self, size_t pos);
 209int bitmap_get(struct bitmap *self, size_t pos);
 210void bitmap_reset(struct bitmap *self);
 211void bitmap_free(struct bitmap *self);
 212int bitmap_equals(struct bitmap *self, struct bitmap *other);
 213int bitmap_is_subset(struct bitmap *self, struct bitmap *super);
 214
 215struct ewah_bitmap * bitmap_to_ewah(struct bitmap *bitmap);
 216struct bitmap *ewah_to_bitmap(struct ewah_bitmap *ewah);
 217
 218void bitmap_and_not(struct bitmap *self, struct bitmap *other);
 219void bitmap_or_ewah(struct bitmap *self, struct ewah_bitmap *other);
 220void bitmap_or(struct bitmap *self, const struct bitmap *other);
 221
 222void bitmap_each_bit(struct bitmap *self, ewah_callback callback, void *data);
 223size_t bitmap_popcount(struct bitmap *self);
 224
 225#endif