This reverts commit
16335fdd7ace78a8285ba25fd7a81177a48e7c9b.
We are calling overlay_tree_on_cache() which does use CE_UPDATE
flag to mark duplicated entries, which is the same as the
codepath in git-ls-files with its --with-tree option.
Because the pathname ce->name is given to path_list_insert()
which does not allow duplicates, there is no breakage either way
from the correctness point of view in this codepath, unlike the
one in ls-files. But avoiding unnecessary processing with a
single bit check is certainly better.
for (i = 0; i < active_nr; i++) {
struct cache_entry *ce = active_cache[i];
+ if (ce->ce_flags & htons(CE_UPDATE))
+ continue;
if (!pathspec_match(pattern, m, ce->name, 0))
continue;
path_list_insert(ce->name, list);