Merge branch 'master' into js/c-merge-recursive
authorJunio C Hamano <junkio@cox.net>
Sun, 13 Aug 2006 01:34:36 +0000 (18:34 -0700)
committerJunio C Hamano <junkio@cox.net>
Sun, 13 Aug 2006 01:35:14 +0000 (18:35 -0700)
Adjust to hold_lock_file_for_update() change on the master.

1  2 
Makefile
builtin-read-tree.c
cache.h
git-rebase.sh
merge-recursive.c
read-cache.c
diff --combined Makefile
index 81d26a0881eb813f556ff4cd45084b3f4ebad565,0761d6c6eddd7894f2d1625cfed0ef2623661a32..1c327c1d5c42ca73d4c55d5341d57606ea80ec61
+++ b/Makefile
@@@ -24,6 -24,11 +24,11 @@@ all
  # Define NO_D_TYPE_IN_DIRENT if your platform defines DT_UNKNOWN but lacks
  # d_type in struct dirent (latest Cygwin -- will be fixed soonish).
  #
+ # Define NO_C99_FORMAT if your formatted IO functions (printf/scanf et.al.)
+ # do not support the 'size specifiers' introduced by C99, namely ll, hh,
+ # j, z, t. (representing long long int, char, intmax_t, size_t, ptrdiff_t).
+ # some c compilers supported these specifiers prior to C99 as an extension.
+ #
  # Define NO_STRCASESTR if you don't have strcasestr.
  #
  # Define NO_STRLCPY if you don't have strlcpy.
@@@ -173,16 -178,15 +178,16 @@@ PROGRAMS = 
        git-hash-object$X git-index-pack$X git-local-fetch$X \
        git-merge-base$X \
        git-merge-index$X git-mktag$X git-mktree$X git-pack-objects$X git-patch-id$X \
-       git-peek-remote$X git-prune-packed$X git-receive-pack$X \
+       git-peek-remote$X git-receive-pack$X \
        git-send-pack$X git-shell$X \
        git-show-index$X git-ssh-fetch$X \
        git-ssh-upload$X git-unpack-file$X \
        git-unpack-objects$X git-update-server-info$X \
        git-upload-pack$X git-verify-pack$X \
        git-symbolic-ref$X \
-       git-name-rev$X git-pack-redundant$X git-repo-config$X git-var$X \
+       git-name-rev$X git-pack-redundant$X git-var$X \
 -      git-describe$X git-merge-tree$X git-blame$X git-imap-send$X
 +      git-describe$X git-merge-tree$X git-blame$X git-imap-send$X \
 +      git-merge-recur$X
  
  BUILT_INS = git-log$X git-whatchanged$X git-show$X git-update-ref$X \
        git-count-objects$X git-diff$X git-push$X git-mailsplit$X \
        git-read-tree$X git-commit-tree$X git-write-tree$X \
        git-apply$X git-show-branch$X git-diff-files$X git-update-index$X \
        git-diff-index$X git-diff-stages$X git-diff-tree$X git-cat-file$X \
-       git-fmt-merge-msg$X git-prune$X git-mv$X
+       git-fmt-merge-msg$X git-prune$X git-mv$X git-prune-packed$X \
+       git-repo-config$X
  
  # what 'all' will build and 'install' will install, in gitexecdir
  ALL_PROGRAMS = $(PROGRAMS) $(SIMPLE_PROGRAMS) $(SCRIPTS)
@@@ -222,7 -227,7 +228,7 @@@ LIB_H = 
        blob.h cache.h commit.h csum-file.h delta.h \
        diff.h object.h pack.h pkt-line.h quote.h refs.h \
        run-command.h strbuf.h tag.h tree.h git-compat-util.h revision.h \
 -      tree-walk.h log-tree.h dir.h path-list.h
 +      tree-walk.h log-tree.h dir.h path-list.h unpack-trees.h
  
  DIFF_OBJS = \
        diff.o diff-lib.o diffcore-break.o diffcore-order.o \
@@@ -237,7 -242,7 +243,7 @@@ LIB_OBJS = 
        server-info.o setup.o sha1_file.o sha1_name.o strbuf.o \
        tag.o tree.o usage.o config.o environment.o ctype.o copy.o \
        fetch-clone.o revision.o pager.o tree-walk.o xdiff-interface.o \
 -      alloc.o merge-file.o path-list.o $(DIFF_OBJS)
 +      alloc.o merge-file.o path-list.o unpack-trees.o $(DIFF_OBJS)
  
  BUILTIN_OBJS = \
        builtin-log.o builtin-help.o builtin-count.o builtin-diff.o builtin-push.o \
        builtin-diff-index.o builtin-diff-stages.o builtin-diff-tree.o \
        builtin-cat-file.o builtin-mailsplit.o builtin-stripspace.o \
        builtin-update-ref.o builtin-fmt-merge-msg.o builtin-prune.o \
-       builtin-mv.o
+       builtin-mv.o builtin-prune-packed.o builtin-repo-config.o
  
  GITLIBS = $(LIB_FILE) $(XDIFF_LIB)
  LIBS = $(GITLIBS) -lz
@@@ -309,9 -314,9 +315,9 @@@ ifeq ($(uname_O),Cygwin
        NO_D_TYPE_IN_DIRENT = YesPlease
        NO_D_INO_IN_DIRENT = YesPlease
        NO_STRCASESTR = YesPlease
-       NO_STRLCPY = YesPlease
        NO_SYMLINK_HEAD = YesPlease
        NEEDS_LIBICONV = YesPlease
+       NO_C99_FORMAT = YesPlease
        # There are conflicting reports about this.
        # On some boxes NO_MMAP is needed, and not so elsewhere.
        # Try uncommenting this if you see things break -- YMMV.
@@@ -433,6 -438,9 +439,9 @@@ endi
  ifdef NO_D_INO_IN_DIRENT
        ALL_CFLAGS += -DNO_D_INO_IN_DIRENT
  endif
+ ifdef NO_C99_FORMAT
+       ALL_CFLAGS += -DNO_C99_FORMAT
+ endif
  ifdef NO_SYMLINK_HEAD
        ALL_CFLAGS += -DNO_SYMLINK_HEAD
  endif
@@@ -639,11 -647,6 +648,11 @@@ git-http-push$X: revision.o http.o http
        $(CC) $(ALL_CFLAGS) -o $@ $(ALL_LDFLAGS) $(filter %.o,$^) \
                $(LIBS) $(CURL_LIBCURL) $(EXPAT_LIBEXPAT)
  
 +merge-recursive.o path-list.o: path-list.h
 +git-merge-recur$X: merge-recursive.o path-list.o $(GITLIBS)
 +      $(CC) $(ALL_CFLAGS) -o $@ $(ALL_LDFLAGS) $(filter %.o,$^) \
 +              $(LIBS)
 +
  $(LIB_OBJS) $(BUILTIN_OBJS): $(LIB_H)
  $(patsubst git-%$X,%.o,$(PROGRAMS)): $(LIB_H) $(wildcard */*.h)
  $(DIFF_OBJS): diffcore.h
@@@ -718,7 -721,7 +727,7 @@@ install: al
        $(INSTALL) -d -m755 '$(DESTDIR_SQ)$(gitexecdir_SQ)'
        $(INSTALL) $(ALL_PROGRAMS) '$(DESTDIR_SQ)$(gitexecdir_SQ)'
        $(INSTALL) git$X gitk '$(DESTDIR_SQ)$(bindir_SQ)'
-       $(MAKE) -C templates install
+       $(MAKE) -C templates DESTDIR='$(DESTDIR_SQ)' install
        $(INSTALL) -d -m755 '$(DESTDIR_SQ)$(GIT_PYTHON_DIR_SQ)'
        $(INSTALL) $(PYMODULES) '$(DESTDIR_SQ)$(GIT_PYTHON_DIR_SQ)'
        if test 'z$(bindir_SQ)' != 'z$(gitexecdir_SQ)'; \
@@@ -802,7 -805,7 +811,7 @@@ check-docs:
        do \
                case "$$v" in \
                git-merge-octopus | git-merge-ours | git-merge-recursive | \
 -              git-merge-resolve | git-merge-stupid | \
 +              git-merge-resolve | git-merge-stupid | git-merge-recur | \
                git-ssh-pull | git-ssh-push ) continue ;; \
                esac ; \
                test -f "Documentation/$$v.txt" || \
diff --combined builtin-read-tree.c
index 8869cedea1f9b07d78520858876cca614283d01b,71a7026df4bec244acdf36ef9559eecc5b65fae3..8da8acbb0a25f88073254e21936a6ad5c6d0cca4
   *
   * Copyright (C) Linus Torvalds, 2005
   */
 -#define DBRT_DEBUG 1
  
  #include "cache.h"
 -
  #include "object.h"
  #include "tree.h"
  #include "tree-walk.h"
  #include "cache-tree.h"
 -#include <sys/time.h>
 -#include <signal.h>
 +#include "unpack-trees.h"
  #include "builtin.h"
  
 -static int reset = 0;
 -static int merge = 0;
 -static int update = 0;
 -static int index_only = 0;
 -static int nontrivial_merge = 0;
 -static int trivial_merges_only = 0;
 -static int aggressive = 0;
 -static int verbose_update = 0;
 -static volatile int progress_update = 0;
 -static const char *prefix = NULL;
 -
 -static int head_idx = -1;
 -static int merge_size = 0;
 -
  static struct object_list *trees = NULL;
  
 -static struct cache_entry df_conflict_entry;
 -
 -struct tree_entry_list {
 -      struct tree_entry_list *next;
 -      unsigned directory : 1;
 -      unsigned executable : 1;
 -      unsigned symlink : 1;
 -      unsigned int mode;
 -      const char *name;
 -      const unsigned char *sha1;
 -};
 -
 -static struct tree_entry_list df_conflict_list;
 -
 -typedef int (*merge_fn_t)(struct cache_entry **src);
 -
 -static struct tree_entry_list *create_tree_entry_list(struct tree *tree)
 -{
 -      struct tree_desc desc;
 -      struct name_entry one;
 -      struct tree_entry_list *ret = NULL;
 -      struct tree_entry_list **list_p = &ret;
 -
 -      desc.buf = tree->buffer;
 -      desc.size = tree->size;
 -
 -      while (tree_entry(&desc, &one)) {
 -              struct tree_entry_list *entry;
 -
 -              entry = xmalloc(sizeof(struct tree_entry_list));
 -              entry->name = one.path;
 -              entry->sha1 = one.sha1;
 -              entry->mode = one.mode;
 -              entry->directory = S_ISDIR(one.mode) != 0;
 -              entry->executable = (one.mode & S_IXUSR) != 0;
 -              entry->symlink = S_ISLNK(one.mode) != 0;
 -              entry->next = NULL;
 -
 -              *list_p = entry;
 -              list_p = &entry->next;
 -      }
 -      return ret;
 -}
 -
 -static int entcmp(const char *name1, int dir1, const char *name2, int dir2)
 -{
 -      int len1 = strlen(name1);
 -      int len2 = strlen(name2);
 -      int len = len1 < len2 ? len1 : len2;
 -      int ret = memcmp(name1, name2, len);
 -      unsigned char c1, c2;
 -      if (ret)
 -              return ret;
 -      c1 = name1[len];
 -      c2 = name2[len];
 -      if (!c1 && dir1)
 -              c1 = '/';
 -      if (!c2 && dir2)
 -              c2 = '/';
 -      ret = (c1 < c2) ? -1 : (c1 > c2) ? 1 : 0;
 -      if (c1 && c2 && !ret)
 -              ret = len1 - len2;
 -      return ret;
 -}
 -
 -static int unpack_trees_rec(struct tree_entry_list **posns, int len,
 -                          const char *base, merge_fn_t fn, int *indpos)
 -{
 -      int baselen = strlen(base);
 -      int src_size = len + 1;
 -      do {
 -              int i;
 -              const char *first;
 -              int firstdir = 0;
 -              int pathlen;
 -              unsigned ce_size;
 -              struct tree_entry_list **subposns;
 -              struct cache_entry **src;
 -              int any_files = 0;
 -              int any_dirs = 0;
 -              char *cache_name;
 -              int ce_stage;
 -
 -              /* Find the first name in the input. */
 -
 -              first = NULL;
 -              cache_name = NULL;
 -
 -              /* Check the cache */
 -              if (merge && *indpos < active_nr) {
 -                      /* This is a bit tricky: */
 -                      /* If the index has a subdirectory (with
 -                       * contents) as the first name, it'll get a
 -                       * filename like "foo/bar". But that's after
 -                       * "foo", so the entry in trees will get
 -                       * handled first, at which point we'll go into
 -                       * "foo", and deal with "bar" from the index,
 -                       * because the base will be "foo/". The only
 -                       * way we can actually have "foo/bar" first of
 -                       * all the things is if the trees don't
 -                       * contain "foo" at all, in which case we'll
 -                       * handle "foo/bar" without going into the
 -                       * directory, but that's fine (and will return
 -                       * an error anyway, with the added unknown
 -                       * file case.
 -                       */
 -
 -                      cache_name = active_cache[*indpos]->name;
 -                      if (strlen(cache_name) > baselen &&
 -                          !memcmp(cache_name, base, baselen)) {
 -                              cache_name += baselen;
 -                              first = cache_name;
 -                      } else {
 -                              cache_name = NULL;
 -                      }
 -              }
 -
 -#if DBRT_DEBUG > 1
 -              if (first)
 -                      printf("index %s\n", first);
 -#endif
 -              for (i = 0; i < len; i++) {
 -                      if (!posns[i] || posns[i] == &df_conflict_list)
 -                              continue;
 -#if DBRT_DEBUG > 1
 -                      printf("%d %s\n", i + 1, posns[i]->name);
 -#endif
 -                      if (!first || entcmp(first, firstdir,
 -                                           posns[i]->name, 
 -                                           posns[i]->directory) > 0) {
 -                              first = posns[i]->name;
 -                              firstdir = posns[i]->directory;
 -                      }
 -              }
 -              /* No name means we're done */
 -              if (!first)
 -                      return 0;
 -
 -              pathlen = strlen(first);
 -              ce_size = cache_entry_size(baselen + pathlen);
 -
 -              src = xcalloc(src_size, sizeof(struct cache_entry *));
 -
 -              subposns = xcalloc(len, sizeof(struct tree_list_entry *));
 -
 -              if (cache_name && !strcmp(cache_name, first)) {
 -                      any_files = 1;
 -                      src[0] = active_cache[*indpos];
 -                      remove_cache_entry_at(*indpos);
 -              }
 -
 -              for (i = 0; i < len; i++) {
 -                      struct cache_entry *ce;
 -
 -                      if (!posns[i] ||
 -                          (posns[i] != &df_conflict_list &&
 -                           strcmp(first, posns[i]->name))) {
 -                              continue;
 -                      }
 -
 -                      if (posns[i] == &df_conflict_list) {
 -                              src[i + merge] = &df_conflict_entry;
 -                              continue;
 -                      }
 -
 -                      if (posns[i]->directory) {
 -                              struct tree *tree = lookup_tree(posns[i]->sha1);
 -                              any_dirs = 1;
 -                              parse_tree(tree);
 -                              subposns[i] = create_tree_entry_list(tree);
 -                              posns[i] = posns[i]->next;
 -                              src[i + merge] = &df_conflict_entry;
 -                              continue;
 -                      }
 -
 -                      if (!merge)
 -                              ce_stage = 0;
 -                      else if (i + 1 < head_idx)
 -                              ce_stage = 1;
 -                      else if (i + 1 > head_idx)
 -                              ce_stage = 3;
 -                      else
 -                              ce_stage = 2;
 -
 -                      ce = xcalloc(1, ce_size);
 -                      ce->ce_mode = create_ce_mode(posns[i]->mode);
 -                      ce->ce_flags = create_ce_flags(baselen + pathlen,
 -                                                     ce_stage);
 -                      memcpy(ce->name, base, baselen);
 -                      memcpy(ce->name + baselen, first, pathlen + 1);
 -
 -                      any_files = 1;
 -
 -                      memcpy(ce->sha1, posns[i]->sha1, 20);
 -                      src[i + merge] = ce;
 -                      subposns[i] = &df_conflict_list;
 -                      posns[i] = posns[i]->next;
 -              }
 -              if (any_files) {
 -                      if (merge) {
 -                              int ret;
 -
 -#if DBRT_DEBUG > 1
 -                              printf("%s:\n", first);
 -                              for (i = 0; i < src_size; i++) {
 -                                      printf(" %d ", i);
 -                                      if (src[i])
 -                                              printf("%s\n", sha1_to_hex(src[i]->sha1));
 -                                      else
 -                                              printf("\n");
 -                              }
 -#endif
 -                              ret = fn(src);
 -                              
 -#if DBRT_DEBUG > 1
 -                              printf("Added %d entries\n", ret);
 -#endif
 -                              *indpos += ret;
 -                      } else {
 -                              for (i = 0; i < src_size; i++) {
 -                                      if (src[i]) {
 -                                              add_cache_entry(src[i], ADD_CACHE_OK_TO_ADD|ADD_CACHE_SKIP_DFCHECK);
 -                                      }
 -                              }
 -                      }
 -              }
 -              if (any_dirs) {
 -                      char *newbase = xmalloc(baselen + 2 + pathlen);
 -                      memcpy(newbase, base, baselen);
 -                      memcpy(newbase + baselen, first, pathlen);
 -                      newbase[baselen + pathlen] = '/';
 -                      newbase[baselen + pathlen + 1] = '\0';
 -                      if (unpack_trees_rec(subposns, len, newbase, fn,
 -                                           indpos))
 -                              return -1;
 -                      free(newbase);
 -              }
 -              free(subposns);
 -              free(src);
 -      } while (1);
 -}
 -
 -static void reject_merge(struct cache_entry *ce)
 -{
 -      die("Entry '%s' would be overwritten by merge. Cannot merge.", 
 -          ce->name);
 -}
 -
 -/* Unlink the last component and attempt to remove leading
 - * directories, in case this unlink is the removal of the
 - * last entry in the directory -- empty directories are removed.
 - */
 -static void unlink_entry(char *name)
 -{
 -      char *cp, *prev;
 -
 -      if (unlink(name))
 -              return;
 -      prev = NULL;
 -      while (1) {
 -              int status;
 -              cp = strrchr(name, '/');
 -              if (prev)
 -                      *prev = '/';
 -              if (!cp)
 -                      break;
 -
 -              *cp = 0;
 -              status = rmdir(name);
 -              if (status) {
 -                      *cp = '/';
 -                      break;
 -              }
 -              prev = cp;
 -      }
 -}
 -
 -static void progress_interval(int signum)
 -{
 -      progress_update = 1;
 -}
 -
 -static void setup_progress_signal(void)
 -{
 -      struct sigaction sa;
 -      struct itimerval v;
 -
 -      memset(&sa, 0, sizeof(sa));
 -      sa.sa_handler = progress_interval;
 -      sigemptyset(&sa.sa_mask);
 -      sa.sa_flags = SA_RESTART;
 -      sigaction(SIGALRM, &sa, NULL);
 -
 -      v.it_interval.tv_sec = 1;
 -      v.it_interval.tv_usec = 0;
 -      v.it_value = v.it_interval;
 -      setitimer(ITIMER_REAL, &v, NULL);
 -}
 -
 -static struct checkout state;
 -static void check_updates(struct cache_entry **src, int nr)
 -{
 -      unsigned short mask = htons(CE_UPDATE);
 -      unsigned last_percent = 200, cnt = 0, total = 0;
 -
 -      if (update && verbose_update) {
 -              for (total = cnt = 0; cnt < nr; cnt++) {
 -                      struct cache_entry *ce = src[cnt];
 -                      if (!ce->ce_mode || ce->ce_flags & mask)
 -                              total++;
 -              }
 -
 -              /* Don't bother doing this for very small updates */
 -              if (total < 250)
 -                      total = 0;
 -
 -              if (total) {
 -                      fprintf(stderr, "Checking files out...\n");
 -                      setup_progress_signal();
 -                      progress_update = 1;
 -              }
 -              cnt = 0;
 -      }
 -
 -      while (nr--) {
 -              struct cache_entry *ce = *src++;
 -
 -              if (total) {
 -                      if (!ce->ce_mode || ce->ce_flags & mask) {
 -                              unsigned percent;
 -                              cnt++;
 -                              percent = (cnt * 100) / total;
 -                              if (percent != last_percent ||
 -                                  progress_update) {
 -                                      fprintf(stderr, "%4u%% (%u/%u) done\r",
 -                                              percent, cnt, total);
 -                                      last_percent = percent;
 -                                      progress_update = 0;
 -                              }
 -                      }
 -              }
 -              if (!ce->ce_mode) {
 -                      if (update)
 -                              unlink_entry(ce->name);
 -                      continue;
 -              }
 -              if (ce->ce_flags & mask) {
 -                      ce->ce_flags &= ~mask;
 -                      if (update)
 -                              checkout_entry(ce, &state, NULL);
 -              }
 -      }
 -      if (total) {
 -              signal(SIGALRM, SIG_IGN);
 -              fputc('\n', stderr);
 -      }
 -}
 -
 -static int unpack_trees(merge_fn_t fn)
 -{
 -      int indpos = 0;
 -      unsigned len = object_list_length(trees);
 -      struct tree_entry_list **posns;
 -      int i;
 -      struct object_list *posn = trees;
 -      merge_size = len;
 -
 -      if (len) {
 -              posns = xmalloc(len * sizeof(struct tree_entry_list *));
 -              for (i = 0; i < len; i++) {
 -                      posns[i] = create_tree_entry_list((struct tree *) posn->item);
 -                      posn = posn->next;
 -              }
 -              if (unpack_trees_rec(posns, len, prefix ? prefix : "",
 -                                   fn, &indpos))
 -                      return -1;
 -      }
 -
 -      if (trivial_merges_only && nontrivial_merge)
 -              die("Merge requires file-level merging");
 -
 -      check_updates(active_cache, active_nr);
 -      return 0;
 -}
 -
  static int list_tree(unsigned char *sha1)
  {
        struct tree *tree = parse_tree_indirect(sha1);
        return 0;
  }
  
 -static int same(struct cache_entry *a, struct cache_entry *b)
 -{
 -      if (!!a != !!b)
 -              return 0;
 -      if (!a && !b)
 -              return 1;
 -      return a->ce_mode == b->ce_mode && 
 -              !memcmp(a->sha1, b->sha1, 20);
 -}
 -
 -
 -/*
 - * When a CE gets turned into an unmerged entry, we
 - * want it to be up-to-date
 - */
 -static void verify_uptodate(struct cache_entry *ce)
 -{
 -      struct stat st;
 -
 -      if (index_only || reset)
 -              return;
 -
 -      if (!lstat(ce->name, &st)) {
 -              unsigned changed = ce_match_stat(ce, &st, 1);
 -              if (!changed)
 -                      return;
 -              errno = 0;
 -      }
 -      if (reset) {
 -              ce->ce_flags |= htons(CE_UPDATE);
 -              return;
 -      }
 -      if (errno == ENOENT)
 -              return;
 -      die("Entry '%s' not uptodate. Cannot merge.", ce->name);
 -}
 -
 -static void invalidate_ce_path(struct cache_entry *ce)
 -{
 -      if (ce)
 -              cache_tree_invalidate_path(active_cache_tree, ce->name);
 -}
 -
 -/*
 - * We do not want to remove or overwrite a working tree file that
 - * is not tracked.
 - */
 -static void verify_absent(const char *path, const char *action)
 -{
 -      struct stat st;
 -
 -      if (index_only || reset || !update)
 -              return;
 -      if (!lstat(path, &st))
 -              die("Untracked working tree file '%s' "
 -                  "would be %s by merge.", path, action);
 -}
 -
 -static int merged_entry(struct cache_entry *merge, struct cache_entry *old)
 -{
 -      merge->ce_flags |= htons(CE_UPDATE);
 -      if (old) {
 -              /*
 -               * See if we can re-use the old CE directly?
 -               * That way we get the uptodate stat info.
 -               *
 -               * This also removes the UPDATE flag on
 -               * a match.
 -               */
 -              if (same(old, merge)) {
 -                      *merge = *old;
 -              } else {
 -                      verify_uptodate(old);
 -                      invalidate_ce_path(old);
 -              }
 -      }
 -      else {
 -              verify_absent(merge->name, "overwritten");
 -              invalidate_ce_path(merge);
 -      }
 -
 -      merge->ce_flags &= ~htons(CE_STAGEMASK);
 -      add_cache_entry(merge, ADD_CACHE_OK_TO_ADD|ADD_CACHE_OK_TO_REPLACE);
 -      return 1;
 -}
 -
 -static int deleted_entry(struct cache_entry *ce, struct cache_entry *old)
 -{
 -      if (old)
 -              verify_uptodate(old);
 -      else
 -              verify_absent(ce->name, "removed");
 -      ce->ce_mode = 0;
 -      add_cache_entry(ce, ADD_CACHE_OK_TO_ADD|ADD_CACHE_OK_TO_REPLACE);
 -      invalidate_ce_path(ce);
 -      return 1;
 -}
 -
 -static int keep_entry(struct cache_entry *ce)
 -{
 -      add_cache_entry(ce, ADD_CACHE_OK_TO_ADD);
 -      return 1;
 -}
 -
 -#if DBRT_DEBUG
 -static void show_stage_entry(FILE *o,
 -                           const char *label, const struct cache_entry *ce)
 -{
 -      if (!ce)
 -              fprintf(o, "%s (missing)\n", label);
 -      else
 -              fprintf(o, "%s%06o %s %d\t%s\n",
 -                      label,
 -                      ntohl(ce->ce_mode),
 -                      sha1_to_hex(ce->sha1),
 -                      ce_stage(ce),
 -                      ce->name);
 -}
 -#endif
 -
 -static int threeway_merge(struct cache_entry **stages)
 -{
 -      struct cache_entry *index;
 -      struct cache_entry *head; 
 -      struct cache_entry *remote = stages[head_idx + 1];
 -      int count;
 -      int head_match = 0;
 -      int remote_match = 0;
 -      const char *path = NULL;
 -
 -      int df_conflict_head = 0;
 -      int df_conflict_remote = 0;
 -
 -      int any_anc_missing = 0;
 -      int no_anc_exists = 1;
 -      int i;
 -
 -      for (i = 1; i < head_idx; i++) {
 -              if (!stages[i])
 -                      any_anc_missing = 1;
 -              else {
 -                      if (!path)
 -                              path = stages[i]->name;
 -                      no_anc_exists = 0;
 -              }
 -      }
 -
 -      index = stages[0];
 -      head = stages[head_idx];
 -
 -      if (head == &df_conflict_entry) {
 -              df_conflict_head = 1;
 -              head = NULL;
 -      }
 -
 -      if (remote == &df_conflict_entry) {
 -              df_conflict_remote = 1;
 -              remote = NULL;
 -      }
 -
 -      if (!path && index)
 -              path = index->name;
 -      if (!path && head)
 -              path = head->name;
 -      if (!path && remote)
 -              path = remote->name;
 -
 -      /* First, if there's a #16 situation, note that to prevent #13
 -       * and #14.
 -       */
 -      if (!same(remote, head)) {
 -              for (i = 1; i < head_idx; i++) {
 -                      if (same(stages[i], head)) {
 -                              head_match = i;
 -                      }
 -                      if (same(stages[i], remote)) {
 -                              remote_match = i;
 -                      }
 -              }
 -      }
 -
 -      /* We start with cases where the index is allowed to match
 -       * something other than the head: #14(ALT) and #2ALT, where it
 -       * is permitted to match the result instead.
 -       */
 -      /* #14, #14ALT, #2ALT */
 -      if (remote && !df_conflict_head && head_match && !remote_match) {
 -              if (index && !same(index, remote) && !same(index, head))
 -                      reject_merge(index);
 -              return merged_entry(remote, index);
 -      }
 -      /*
 -       * If we have an entry in the index cache, then we want to
 -       * make sure that it matches head.
 -       */
 -      if (index && !same(index, head)) {
 -              reject_merge(index);
 -      }
 -
 -      if (head) {
 -              /* #5ALT, #15 */
 -              if (same(head, remote))
 -                      return merged_entry(head, index);
 -              /* #13, #3ALT */
 -              if (!df_conflict_remote && remote_match && !head_match)
 -                      return merged_entry(head, index);
 -      }
 -
 -      /* #1 */
 -      if (!head && !remote && any_anc_missing)
 -              return 0;
 -
 -      /* Under the new "aggressive" rule, we resolve mostly trivial
 -       * cases that we historically had git-merge-one-file resolve.
 -       */
 -      if (aggressive) {
 -              int head_deleted = !head && !df_conflict_head;
 -              int remote_deleted = !remote && !df_conflict_remote;
 -              /*
 -               * Deleted in both.
 -               * Deleted in one and unchanged in the other.
 -               */
 -              if ((head_deleted && remote_deleted) ||
 -                  (head_deleted && remote && remote_match) ||
 -                  (remote_deleted && head && head_match)) {
 -                      if (index)
 -                              return deleted_entry(index, index);
 -                      else if (path)
 -                              verify_absent(path, "removed");
 -                      return 0;
 -              }
 -              /*
 -               * Added in both, identically.
 -               */
 -              if (no_anc_exists && head && remote && same(head, remote))
 -                      return merged_entry(head, index);
 -
 -      }
 -
 -      /* Below are "no merge" cases, which require that the index be
 -       * up-to-date to avoid the files getting overwritten with
 -       * conflict resolution files. 
 -       */
 -      if (index) {
 -              verify_uptodate(index);
 -      }
 -      else if (path)
 -              verify_absent(path, "overwritten");
 -
 -      nontrivial_merge = 1;
 -
 -      /* #2, #3, #4, #6, #7, #9, #11. */
 -      count = 0;
 -      if (!head_match || !remote_match) {
 -              for (i = 1; i < head_idx; i++) {
 -                      if (stages[i]) {
 -                              keep_entry(stages[i]);
 -                              count++;
 -                              break;
 -                      }
 -              }
 -      }
 -#if DBRT_DEBUG
 -      else {
 -              fprintf(stderr, "read-tree: warning #16 detected\n");
 -              show_stage_entry(stderr, "head   ", stages[head_match]);
 -              show_stage_entry(stderr, "remote ", stages[remote_match]);
 -      }
 -#endif
 -      if (head) { count += keep_entry(head); }
 -      if (remote) { count += keep_entry(remote); }
 -      return count;
 -}
 -
 -/*
 - * Two-way merge.
 - *
 - * The rule is to "carry forward" what is in the index without losing
 - * information across a "fast forward", favoring a successful merge
 - * over a merge failure when it makes sense.  For details of the
 - * "carry forward" rule, please see <Documentation/git-read-tree.txt>.
 - *
 - */
 -static int twoway_merge(struct cache_entry **src)
 -{
 -      struct cache_entry *current = src[0];
 -      struct cache_entry *oldtree = src[1], *newtree = src[2];
 -
 -      if (merge_size != 2)
 -              return error("Cannot do a twoway merge of %d trees",
 -                           merge_size);
 -
 -      if (current) {
 -              if ((!oldtree && !newtree) || /* 4 and 5 */
 -                  (!oldtree && newtree &&
 -                   same(current, newtree)) || /* 6 and 7 */
 -                  (oldtree && newtree &&
 -                   same(oldtree, newtree)) || /* 14 and 15 */
 -                  (oldtree && newtree &&
 -                   !same(oldtree, newtree) && /* 18 and 19*/
 -                   same(current, newtree))) {
 -                      return keep_entry(current);
 -              }
 -              else if (oldtree && !newtree && same(current, oldtree)) {
 -                      /* 10 or 11 */
 -                      return deleted_entry(oldtree, current);
 -              }
 -              else if (oldtree && newtree &&
 -                       same(current, oldtree) && !same(current, newtree)) {
 -                      /* 20 or 21 */
 -                      return merged_entry(newtree, current);
 -              }
 -              else {
 -                      /* all other failures */
 -                      if (oldtree)
 -                              reject_merge(oldtree);
 -                      if (current)
 -                              reject_merge(current);
 -                      if (newtree)
 -                              reject_merge(newtree);
 -                      return -1;
 -              }
 -      }
 -      else if (newtree)
 -              return merged_entry(newtree, current);
 -      else
 -              return deleted_entry(oldtree, current);
 -}
 -
 -/*
 - * Bind merge.
 - *
 - * Keep the index entries at stage0, collapse stage1 but make sure
 - * stage0 does not have anything there.
 - */
 -static int bind_merge(struct cache_entry **src)
 -{
 -      struct cache_entry *old = src[0];
 -      struct cache_entry *a = src[1];
 -
 -      if (merge_size != 1)
 -              return error("Cannot do a bind merge of %d trees\n",
 -                           merge_size);
 -      if (a && old)
 -              die("Entry '%s' overlaps.  Cannot bind.", a->name);
 -      if (!a)
 -              return keep_entry(old);
 -      else
 -              return merged_entry(a, NULL);
 -}
 -
 -/*
 - * One-way merge.
 - *
 - * The rule is:
 - * - take the stat information from stage0, take the data from stage1
 - */
 -static int oneway_merge(struct cache_entry **src)
 -{
 -      struct cache_entry *old = src[0];
 -      struct cache_entry *a = src[1];
 -
 -      if (merge_size != 1)
 -              return error("Cannot do a oneway merge of %d trees",
 -                           merge_size);
 -
 -      if (!a)
 -              return deleted_entry(old, old);
 -      if (old && same(old, a)) {
 -              if (reset) {
 -                      struct stat st;
 -                      if (lstat(old->name, &st) ||
 -                          ce_match_stat(old, &st, 1))
 -                              old->ce_flags |= htons(CE_UPDATE);
 -              }
 -              return keep_entry(old);
 -      }
 -      return merged_entry(a, old);
 -}
 -
  static int read_cache_unmerged(void)
  {
        int i;
                if (ce_stage(ce)) {
                        if (last && !strcmp(ce->name, last->name))
                                continue;
 -                      invalidate_ce_path(ce);
 +                      cache_tree_invalidate_path(active_cache_tree, ce->name);
                        last = ce;
                        ce->ce_mode = 0;
                        ce->ce_flags &= ~htons(CE_STAGEMASK);
@@@ -88,24 -870,26 +88,22 @@@ static const char read_tree_usage[] = "
  
  static struct lock_file lock_file;
  
- int cmd_read_tree(int argc, const char **argv, const char *prefix)
+ int cmd_read_tree(int argc, const char **argv, const char *unused_prefix)
  {
        int i, newfd, stage = 0;
        unsigned char sha1[20];
 -      merge_fn_t fn = NULL;
 +      struct unpack_trees_options opts;
  
 -      df_conflict_list.next = &df_conflict_list;
 -      state.base_dir = "";
 -      state.force = 1;
 -      state.quiet = 1;
 -      state.refresh_cache = 1;
 +      memset(&opts, 0, sizeof(opts));
 +      opts.head_idx = -1;
  
 +      setup_git_directory();
        git_config(git_default_config);
  
-       newfd = hold_lock_file_for_update(&lock_file, get_index_file());
-       if (newfd < 0)
-               die("unable to create new index file");
+       newfd = hold_lock_file_for_update(&lock_file, get_index_file(), 1);
  
        git_config(git_default_config);
  
 -      merge = 0;
 -      reset = 0;
        for (i = 1; i < argc; i++) {
                const char *arg = argv[i];
  
                 * the working tree.
                 */
                if (!strcmp(arg, "-u")) {
 -                      update = 1;
 +                      opts.update = 1;
                        continue;
                }
  
                if (!strcmp(arg, "-v")) {
 -                      verbose_update = 1;
 +                      opts.verbose_update = 1;
                        continue;
                }
  
                 * not even look at the working tree.
                 */
                if (!strcmp(arg, "-i")) {
 -                      index_only = 1;
 +                      opts.index_only = 1;
                        continue;
                }
  
                 * given subdirectory.
                 */
                if (!strncmp(arg, "--prefix=", 9)) {
 -                      if (stage || merge || prefix)
 +                      if (stage || opts.merge || opts.prefix)
                                usage(read_tree_usage);
 -                      prefix = arg + 9;
 -                      merge = 1;
 +                      opts.prefix = arg + 9;
 +                      opts.merge = 1;
                        stage = 1;
                        if (read_cache_unmerged())
                                die("you need to resolve your current index first");
                 * correspond to them.
                 */
                if (!strcmp(arg, "--reset")) {
 -                      if (stage || merge || prefix)
 +                      if (stage || opts.merge || opts.prefix)
                                usage(read_tree_usage);
 -                      reset = 1;
 -                      merge = 1;
 +                      opts.reset = 1;
 +                      opts.merge = 1;
                        stage = 1;
                        read_cache_unmerged();
                        continue;
                }
  
                if (!strcmp(arg, "--trivial")) {
 -                      trivial_merges_only = 1;
 +                      opts.trivial_merges_only = 1;
                        continue;
                }
  
                if (!strcmp(arg, "--aggressive")) {
 -                      aggressive = 1;
 +                      opts.aggressive = 1;
                        continue;
                }
  
                /* "-m" stands for "merge", meaning we start in stage 1 */
                if (!strcmp(arg, "-m")) {
 -                      if (stage || merge || prefix)
 +                      if (stage || opts.merge || opts.prefix)
                                usage(read_tree_usage);
                        if (read_cache_unmerged())
                                die("you need to resolve your current index first");
                        stage = 1;
 -                      merge = 1;
 +                      opts.merge = 1;
                        continue;
                }
  
                /* using -u and -i at the same time makes no sense */
 -              if (1 < index_only + update)
 +              if (1 < opts.index_only + opts.update)
                        usage(read_tree_usage);
  
                if (get_sha1(arg, sha1))
                        die("failed to unpack tree object %s", arg);
                stage++;
        }
 -      if ((update||index_only) && !merge)
 +      if ((opts.update||opts.index_only) && !opts.merge)
                usage(read_tree_usage);
  
 -      if (prefix) {
 -              int pfxlen = strlen(prefix);
 +      if (opts.prefix) {
 +              int pfxlen = strlen(opts.prefix);
                int pos;
 -              if (prefix[pfxlen-1] != '/')
 +              if (opts.prefix[pfxlen-1] != '/')
                        die("prefix must end with /");
                if (stage != 2)
                        die("binding merge takes only one tree");
 -              pos = cache_name_pos(prefix, pfxlen);
 +              pos = cache_name_pos(opts.prefix, pfxlen);
                if (0 <= pos)
                        die("corrupt index file");
                pos = -pos-1;
                if (pos < active_nr &&
 -                  !strncmp(active_cache[pos]->name, prefix, pfxlen))
 -                      die("subdirectory '%s' already exists.", prefix);
 -              pos = cache_name_pos(prefix, pfxlen-1);
 +                  !strncmp(active_cache[pos]->name, opts.prefix, pfxlen))
 +                      die("subdirectory '%s' already exists.", opts.prefix);
 +              pos = cache_name_pos(opts.prefix, pfxlen-1);
                if (0 <= pos)
 -                      die("file '%.*s' already exists.", pfxlen-1, prefix);
 +                      die("file '%.*s' already exists.",
 +                                      pfxlen-1, opts.prefix);
        }
  
 -      if (merge) {
 +      if (opts.merge) {
                if (stage < 2)
                        die("just how do you expect me to merge %d trees?", stage-1);
                switch (stage - 1) {
                case 1:
 -                      fn = prefix ? bind_merge : oneway_merge;
 +                      opts.fn = opts.prefix ? bind_merge : oneway_merge;
                        break;
                case 2:
 -                      fn = twoway_merge;
 +                      opts.fn = twoway_merge;
                        break;
                case 3:
                default:
 -                      fn = threeway_merge;
 +                      opts.fn = threeway_merge;
                        cache_tree_free(&active_cache_tree);
                        break;
                }
  
                if (stage - 1 >= 3)
 -                      head_idx = stage - 2;
 +                      opts.head_idx = stage - 2;
                else
 -                      head_idx = 1;
 +                      opts.head_idx = 1;
        }
  
 -      unpack_trees(fn);
 +      unpack_trees(trees, &opts);
  
        /*
         * When reading only one tree (either the most basic form,
         * valid cache-tree because the index must match exactly
         * what came from the tree.
         */
 -      if (trees && trees->item && !prefix && (!merge || (stage == 2))) {
 +      if (trees && trees->item && !opts.prefix && (!opts.merge || (stage == 2))) {
                cache_tree_free(&active_cache_tree);
                prime_cache_tree();
        }
diff --combined cache.h
index 7c69b30637406a17fd6ccadcfa58a2a809fba0bb,b2ab2088e37d39a4c8e1927591015bf05a813233..9f90df4a1552b0eeb20c24d5bbed099ed28931c8
+++ b/cache.h
@@@ -145,7 -145,6 +145,7 @@@ extern void verify_non_filename(const c
  extern int read_cache(void);
  extern int read_cache_from(const char *path);
  extern int write_cache(int newfd, struct cache_entry **cache, int entries);
 +extern int discard_cache(void);
  extern int verify_path(const char *path);
  extern int cache_name_pos(const char *name, int namelen);
  #define ADD_CACHE_OK_TO_ADD 1         /* Ok to add */
@@@ -176,7 -175,7 +176,7 @@@ struct lock_file 
        struct lock_file *next;
        char filename[PATH_MAX];
  };
- extern int hold_lock_file_for_update(struct lock_file *, const char *path);
+ extern int hold_lock_file_for_update(struct lock_file *, const char *path, int);
  extern int commit_lock_file(struct lock_file *);
  extern void rollback_lock_file(struct lock_file *);
  
@@@ -387,6 -386,7 +387,7 @@@ extern int receive_keep_pack(int fd[2]
  /* pager.c */
  extern void setup_pager(void);
  extern int pager_in_use;
+ extern int pager_use_color;
  
  /* base85 */
  int decode_85(char *dst, char *line, int linelen);
diff --combined git-rebase.sh
index cb1a9ce12c932f532003ee78c965ee7f839bd207,7d3a5d0e718eebe6fb5d1fa3362f2a7087d6e691..20f74d416732e681d3b44ea610e428529af49235
@@@ -35,13 -35,7 +35,13 @@@ If you would prefer to skip this patch
  To restore the original branch and stop rebasing run \"git rebase --abort\".
  "
  unset newbase
 -strategy=recursive
 +case "${GIT_USE_RECUR_FOR_RECURSIVE}" in
 +'')
 +      strategy=recursive ;;
 +?*)
 +      strategy=recur ;;
 +esac
 +
  do_merge=
  dotest=$GIT_DIR/.dotest-merge
  prec=4
        shift
  done
  
 +case "$strategy,${GIT_USE_RECUR_FOR_RECURSIVE}" in
 +recursive,?*)
 +      strategy=recur ;;
 +esac
 +
  # Make sure we do not have .dotest
  if test -z "$do_merge"
  then
@@@ -277,14 -266,11 +277,11 @@@ onto=$(git-rev-parse --verify "${onto_n
  
  # Check if we are already based on $onto, but this should be
  # done only when upstream and onto are the same.
- if test "$upstream" = "$onto"
+ mb=$(git-merge-base "$onto" "$branch")
+ if test "$upstream" = "$onto" && test "$mb" = "$onto"
  then
-       mb=$(git-merge-base "$onto" "$branch")
-       if test "$mb" = "$onto"
-       then
-               echo >&2 "Current branch $branch_name is up to date."
-               exit 0
-       fi
+       echo >&2 "Current branch $branch_name is up to date."
+       exit 0
  fi
  
  # Rewind the head to "$onto"; this saves our current head in ORIG_HEAD.
@@@ -292,9 -278,9 +289,9 @@@ git-reset --hard "$onto
  
  # If the $onto is a proper descendant of the tip of the branch, then
  # we just fast forwarded.
- if test "$mb" = "$onto"
+ if test "$mb" = "$branch"
  then
-       echo >&2 "Fast-forwarded $branch to $newbase."
+       echo >&2 "Fast-forwarded $branch_name to $onto_name."
        exit 0
  fi
  
diff --combined merge-recursive.c
index 454e2935780ced518b85869b36d0a62d8129e89c,0000000000000000000000000000000000000000..048cca1d13fa72540b6e989618f1490c04dc1eaa
mode 100644,000000..100644
--- /dev/null
@@@ -1,1358 -1,0 +1,1356 @@@
-       int fd = hold_lock_file_for_update(lock, current_index_file);
-       if (fd < 0)
-               die("could not lock %s", lock->filename);
 +/*
 + * Recursive Merge algorithm stolen from git-merge-recursive.py by
 + * Fredrik Kuivinen.
 + * The thieves were Alex Riesen and Johannes Schindelin, in June/July 2006
 + */
 +#include <stdarg.h>
 +#include <string.h>
 +#include <assert.h>
 +#include <sys/wait.h>
 +#include <sys/types.h>
 +#include <sys/stat.h>
 +#include <time.h>
 +#include "cache.h"
 +#include "cache-tree.h"
 +#include "commit.h"
 +#include "blob.h"
 +#include "tree-walk.h"
 +#include "diff.h"
 +#include "diffcore.h"
 +#include "run-command.h"
 +#include "tag.h"
 +#include "unpack-trees.h"
 +#include "path-list.h"
 +
 +/*
 + * A virtual commit has
 + * - (const char *)commit->util set to the name, and
 + * - *(int *)commit->object.sha1 set to the virtual id.
 + */
 +
 +static unsigned commit_list_count(const struct commit_list *l)
 +{
 +      unsigned c = 0;
 +      for (; l; l = l->next )
 +              c++;
 +      return c;
 +}
 +
 +static struct commit *make_virtual_commit(struct tree *tree, const char *comment)
 +{
 +      struct commit *commit = xcalloc(1, sizeof(struct commit));
 +      static unsigned virtual_id = 1;
 +      commit->tree = tree;
 +      commit->util = (void*)comment;
 +      *(int*)commit->object.sha1 = virtual_id++;
 +      /* avoid warnings */
 +      commit->object.parsed = 1;
 +      return commit;
 +}
 +
 +/*
 + * Since we use get_tree_entry(), which does not put the read object into
 + * the object pool, we cannot rely on a == b.
 + */
 +static int sha_eq(const unsigned char *a, const unsigned char *b)
 +{
 +      if (!a && !b)
 +              return 2;
 +      return a && b && memcmp(a, b, 20) == 0;
 +}
 +
 +/*
 + * Since we want to write the index eventually, we cannot reuse the index
 + * for these (temporary) data.
 + */
 +struct stage_data
 +{
 +      struct
 +      {
 +              unsigned mode;
 +              unsigned char sha[20];
 +      } stages[4];
 +      unsigned processed:1;
 +};
 +
 +static struct path_list current_file_set = {NULL, 0, 0, 1};
 +static struct path_list current_directory_set = {NULL, 0, 0, 1};
 +
 +static int output_indent = 0;
 +
 +static void output(const char *fmt, ...)
 +{
 +      va_list args;
 +      int i;
 +      for (i = output_indent; i--;)
 +              fputs("  ", stdout);
 +      va_start(args, fmt);
 +      vfprintf(stdout, fmt, args);
 +      va_end(args);
 +      fputc('\n', stdout);
 +}
 +
 +static void output_commit_title(struct commit *commit)
 +{
 +      int i;
 +      for (i = output_indent; i--;)
 +              fputs("  ", stdout);
 +      if (commit->util)
 +              printf("virtual %s\n", (char *)commit->util);
 +      else {
 +              printf("%s ", sha1_to_hex(commit->object.sha1));
 +              if (parse_commit(commit) != 0)
 +                      printf("(bad commit)\n");
 +              else {
 +                      const char *s;
 +                      int len;
 +                      for (s = commit->buffer; *s; s++)
 +                              if (*s == '\n' && s[1] == '\n') {
 +                                      s += 2;
 +                                      break;
 +                              }
 +                      for (len = 0; s[len] && '\n' != s[len]; len++)
 +                              ; /* do nothing */
 +                      printf("%.*s\n", len, s);
 +              }
 +      }
 +}
 +
 +static const char *current_index_file = NULL;
 +static const char *original_index_file;
 +static const char *temporary_index_file;
 +static int cache_dirty = 0;
 +
 +static int flush_cache(void)
 +{
 +      /* flush temporary index */
 +      struct lock_file *lock = xcalloc(1, sizeof(struct lock_file));
++      int fd = hold_lock_file_for_update(lock, current_index_file, 1);
 +      if (write_cache(fd, active_cache, active_nr) ||
 +                      close(fd) || commit_lock_file(lock))
 +              die ("unable to write %s", current_index_file);
 +      discard_cache();
 +      cache_dirty = 0;
 +      return 0;
 +}
 +
 +static void setup_index(int temp)
 +{
 +      current_index_file = temp ? temporary_index_file: original_index_file;
 +      if (cache_dirty) {
 +              discard_cache();
 +              cache_dirty = 0;
 +      }
 +      unlink(temporary_index_file);
 +      discard_cache();
 +}
 +
 +static struct cache_entry *make_cache_entry(unsigned int mode,
 +              const unsigned char *sha1, const char *path, int stage, int refresh)
 +{
 +      int size, len;
 +      struct cache_entry *ce;
 +
 +      if (!verify_path(path))
 +              return NULL;
 +
 +      len = strlen(path);
 +      size = cache_entry_size(len);
 +      ce = xcalloc(1, size);
 +
 +      memcpy(ce->sha1, sha1, 20);
 +      memcpy(ce->name, path, len);
 +      ce->ce_flags = create_ce_flags(len, stage);
 +      ce->ce_mode = create_ce_mode(mode);
 +
 +      if (refresh)
 +              return refresh_cache_entry(ce, 0);
 +
 +      return ce;
 +}
 +
 +static int add_cacheinfo(unsigned int mode, const unsigned char *sha1,
 +              const char *path, int stage, int refresh, int options)
 +{
 +      struct cache_entry *ce;
 +      if (!cache_dirty)
 +              read_cache_from(current_index_file);
 +      cache_dirty++;
 +      ce = make_cache_entry(mode, sha1 ? sha1 : null_sha1, path, stage, refresh);
 +      if (!ce)
 +              return error("cache_addinfo failed: %s", strerror(cache_errno));
 +      return add_cache_entry(ce, options);
 +}
 +
 +/*
 + * This is a global variable which is used in a number of places but
 + * only written to in the 'merge' function.
 + *
 + * index_only == 1    => Don't leave any non-stage 0 entries in the cache and
 + *                       don't update the working directory.
 + *               0    => Leave unmerged entries in the cache and update
 + *                       the working directory.
 + */
 +static int index_only = 0;
 +
 +static int git_read_tree(struct tree *tree)
 +{
 +      int rc;
 +      struct object_list *trees = NULL;
 +      struct unpack_trees_options opts;
 +
 +      if (cache_dirty)
 +              die("read-tree with dirty cache");
 +
 +      memset(&opts, 0, sizeof(opts));
 +      object_list_append(&tree->object, &trees);
 +      rc = unpack_trees(trees, &opts);
 +      cache_tree_free(&active_cache_tree);
 +
 +      if (rc == 0)
 +              cache_dirty = 1;
 +
 +      return rc;
 +}
 +
 +static int git_merge_trees(int index_only,
 +                         struct tree *common,
 +                         struct tree *head,
 +                         struct tree *merge)
 +{
 +      int rc;
 +      struct object_list *trees = NULL;
 +      struct unpack_trees_options opts;
 +
 +      if (!cache_dirty) {
 +              read_cache_from(current_index_file);
 +              cache_dirty = 1;
 +      }
 +
 +      memset(&opts, 0, sizeof(opts));
 +      if (index_only)
 +              opts.index_only = 1;
 +      else
 +              opts.update = 1;
 +      opts.merge = 1;
 +      opts.head_idx = 2;
 +      opts.fn = threeway_merge;
 +
 +      object_list_append(&common->object, &trees);
 +      object_list_append(&head->object, &trees);
 +      object_list_append(&merge->object, &trees);
 +
 +      rc = unpack_trees(trees, &opts);
 +      cache_tree_free(&active_cache_tree);
 +
 +      cache_dirty = 1;
 +
 +      return rc;
 +}
 +
 +static struct tree *git_write_tree(void)
 +{
 +      struct tree *result = NULL;
 +
 +      if (cache_dirty) {
 +              unsigned i;
 +              for (i = 0; i < active_nr; i++) {
 +                      struct cache_entry *ce = active_cache[i];
 +                      if (ce_stage(ce))
 +                              return NULL;
 +              }
 +      } else
 +              read_cache_from(current_index_file);
 +
 +      if (!active_cache_tree)
 +              active_cache_tree = cache_tree();
 +
 +      if (!cache_tree_fully_valid(active_cache_tree) &&
 +                      cache_tree_update(active_cache_tree,
 +                              active_cache, active_nr, 0, 0) < 0)
 +              die("error building trees");
 +
 +      result = lookup_tree(active_cache_tree->sha1);
 +
 +      flush_cache();
 +      cache_dirty = 0;
 +
 +      return result;
 +}
 +
 +static int save_files_dirs(const unsigned char *sha1,
 +              const char *base, int baselen, const char *path,
 +              unsigned int mode, int stage)
 +{
 +      int len = strlen(path);
 +      char *newpath = malloc(baselen + len + 1);
 +      memcpy(newpath, base, baselen);
 +      memcpy(newpath + baselen, path, len);
 +      newpath[baselen + len] = '\0';
 +
 +      if (S_ISDIR(mode))
 +              path_list_insert(newpath, &current_directory_set);
 +      else
 +              path_list_insert(newpath, &current_file_set);
 +      free(newpath);
 +
 +      return READ_TREE_RECURSIVE;
 +}
 +
 +static int get_files_dirs(struct tree *tree)
 +{
 +      int n;
 +      if (read_tree_recursive(tree, "", 0, 0, NULL, save_files_dirs) != 0)
 +              return 0;
 +      n = current_file_set.nr + current_directory_set.nr;
 +      return n;
 +}
 +
 +/*
 + * Returns a index_entry instance which doesn't have to correspond to
 + * a real cache entry in Git's index.
 + */
 +static struct stage_data *insert_stage_data(const char *path,
 +              struct tree *o, struct tree *a, struct tree *b,
 +              struct path_list *entries)
 +{
 +      struct path_list_item *item;
 +      struct stage_data *e = xcalloc(1, sizeof(struct stage_data));
 +      get_tree_entry(o->object.sha1, path,
 +                      e->stages[1].sha, &e->stages[1].mode);
 +      get_tree_entry(a->object.sha1, path,
 +                      e->stages[2].sha, &e->stages[2].mode);
 +      get_tree_entry(b->object.sha1, path,
 +                      e->stages[3].sha, &e->stages[3].mode);
 +      item = path_list_insert(path, entries);
 +      item->util = e;
 +      return e;
 +}
 +
 +/*
 + * Create a dictionary mapping file names to stage_data objects. The
 + * dictionary contains one entry for every path with a non-zero stage entry.
 + */
 +static struct path_list *get_unmerged(void)
 +{
 +      struct path_list *unmerged = xcalloc(1, sizeof(struct path_list));
 +      int i;
 +
 +      unmerged->strdup_paths = 1;
 +      if (!cache_dirty) {
 +              read_cache_from(current_index_file);
 +              cache_dirty++;
 +      }
 +      for (i = 0; i < active_nr; i++) {
 +              struct path_list_item *item;
 +              struct stage_data *e;
 +              struct cache_entry *ce = active_cache[i];
 +              if (!ce_stage(ce))
 +                      continue;
 +
 +              item = path_list_lookup(ce->name, unmerged);
 +              if (!item) {
 +                      item = path_list_insert(ce->name, unmerged);
 +                      item->util = xcalloc(1, sizeof(struct stage_data));
 +              }
 +              e = item->util;
 +              e->stages[ce_stage(ce)].mode = ntohl(ce->ce_mode);
 +              memcpy(e->stages[ce_stage(ce)].sha, ce->sha1, 20);
 +      }
 +
 +      return unmerged;
 +}
 +
 +struct rename
 +{
 +      struct diff_filepair *pair;
 +      struct stage_data *src_entry;
 +      struct stage_data *dst_entry;
 +      unsigned processed:1;
 +};
 +
 +/*
 + * Get information of all renames which occured between 'o_tree' and
 + * 'tree'. We need the three trees in the merge ('o_tree', 'a_tree' and
 + * 'b_tree') to be able to associate the correct cache entries with
 + * the rename information. 'tree' is always equal to either a_tree or b_tree.
 + */
 +static struct path_list *get_renames(struct tree *tree,
 +                                      struct tree *o_tree,
 +                                      struct tree *a_tree,
 +                                      struct tree *b_tree,
 +                                      struct path_list *entries)
 +{
 +      int i;
 +      struct path_list *renames;
 +      struct diff_options opts;
 +
 +      renames = xcalloc(1, sizeof(struct path_list));
 +      diff_setup(&opts);
 +      opts.recursive = 1;
 +      opts.detect_rename = DIFF_DETECT_RENAME;
 +      opts.output_format = DIFF_FORMAT_NO_OUTPUT;
 +      if (diff_setup_done(&opts) < 0)
 +              die("diff setup failed");
 +      diff_tree_sha1(o_tree->object.sha1, tree->object.sha1, "", &opts);
 +      diffcore_std(&opts);
 +      for (i = 0; i < diff_queued_diff.nr; ++i) {
 +              struct path_list_item *item;
 +              struct rename *re;
 +              struct diff_filepair *pair = diff_queued_diff.queue[i];
 +              if (pair->status != 'R') {
 +                      diff_free_filepair(pair);
 +                      continue;
 +              }
 +              re = xmalloc(sizeof(*re));
 +              re->processed = 0;
 +              re->pair = pair;
 +              item = path_list_lookup(re->pair->one->path, entries);
 +              if (!item)
 +                      re->src_entry = insert_stage_data(re->pair->one->path,
 +                                      o_tree, a_tree, b_tree, entries);
 +              else
 +                      re->src_entry = item->util;
 +
 +              item = path_list_lookup(re->pair->two->path, entries);
 +              if (!item)
 +                      re->dst_entry = insert_stage_data(re->pair->two->path,
 +                                      o_tree, a_tree, b_tree, entries);
 +              else
 +                      re->dst_entry = item->util;
 +              item = path_list_insert(pair->one->path, renames);
 +              item->util = re;
 +      }
 +      opts.output_format = DIFF_FORMAT_NO_OUTPUT;
 +      diff_queued_diff.nr = 0;
 +      diff_flush(&opts);
 +      return renames;
 +}
 +
 +int update_stages(const char *path, struct diff_filespec *o,
 +              struct diff_filespec *a, struct diff_filespec *b, int clear)
 +{
 +      int options = ADD_CACHE_OK_TO_ADD | ADD_CACHE_OK_TO_REPLACE;
 +      if (clear)
 +              if (remove_file_from_cache(path))
 +                      return -1;
 +      if (o)
 +              if (add_cacheinfo(o->mode, o->sha1, path, 1, 0, options))
 +                      return -1;
 +      if (a)
 +              if (add_cacheinfo(a->mode, a->sha1, path, 2, 0, options))
 +                      return -1;
 +      if (b)
 +              if (add_cacheinfo(b->mode, b->sha1, path, 3, 0, options))
 +                      return -1;
 +      return 0;
 +}
 +
 +static int remove_path(const char *name)
 +{
 +      int ret, len;
 +      char *slash, *dirs;
 +
 +      ret = unlink(name);
 +      if (ret)
 +              return ret;
 +      len = strlen(name);
 +      dirs = malloc(len+1);
 +      memcpy(dirs, name, len);
 +      dirs[len] = '\0';
 +      while ((slash = strrchr(name, '/'))) {
 +              *slash = '\0';
 +              len = slash - name;
 +              if (rmdir(name) != 0)
 +                      break;
 +      }
 +      free(dirs);
 +      return ret;
 +}
 +
 +int remove_file(int clean, const char *path)
 +{
 +      int update_cache = index_only || clean;
 +      int update_working_directory = !index_only;
 +
 +      if (update_cache) {
 +              if (!cache_dirty)
 +                      read_cache_from(current_index_file);
 +              cache_dirty++;
 +              if (remove_file_from_cache(path))
 +                      return -1;
 +      }
 +      if (update_working_directory)
 +      {
 +              unlink(path);
 +              if (errno != ENOENT || errno != EISDIR)
 +                      return -1;
 +              remove_path(path);
 +      }
 +      return 0;
 +}
 +
 +static char *unique_path(const char *path, const char *branch)
 +{
 +      char *newpath = xmalloc(strlen(path) + 1 + strlen(branch) + 8 + 1);
 +      int suffix = 0;
 +      struct stat st;
 +      char *p = newpath + strlen(path);
 +      strcpy(newpath, path);
 +      *(p++) = '~';
 +      strcpy(p, branch);
 +      for (; *p; ++p)
 +              if ('/' == *p)
 +                      *p = '_';
 +      while (path_list_has_path(&current_file_set, newpath) ||
 +             path_list_has_path(&current_directory_set, newpath) ||
 +             lstat(newpath, &st) == 0)
 +              sprintf(p, "_%d", suffix++);
 +
 +      path_list_insert(newpath, &current_file_set);
 +      return newpath;
 +}
 +
 +static int mkdir_p(const char *path, unsigned long mode)
 +{
 +      /* path points to cache entries, so strdup before messing with it */
 +      char *buf = strdup(path);
 +      int result = safe_create_leading_directories(buf);
 +      free(buf);
 +      return result;
 +}
 +
 +static void flush_buffer(int fd, const char *buf, unsigned long size)
 +{
 +      while (size > 0) {
 +              long ret = xwrite(fd, buf, size);
 +              if (ret < 0) {
 +                      /* Ignore epipe */
 +                      if (errno == EPIPE)
 +                              break;
 +                      die("merge-recursive: %s", strerror(errno));
 +              } else if (!ret) {
 +                      die("merge-recursive: disk full?");
 +              }
 +              size -= ret;
 +              buf += ret;
 +      }
 +}
 +
 +void update_file_flags(const unsigned char *sha,
 +                     unsigned mode,
 +                     const char *path,
 +                     int update_cache,
 +                     int update_wd)
 +{
 +      if (index_only)
 +              update_wd = 0;
 +
 +      if (update_wd) {
 +              char type[20];
 +              void *buf;
 +              unsigned long size;
 +
 +              buf = read_sha1_file(sha, type, &size);
 +              if (!buf)
 +                      die("cannot read object %s '%s'", sha1_to_hex(sha), path);
 +              if (strcmp(type, blob_type) != 0)
 +                      die("blob expected for %s '%s'", sha1_to_hex(sha), path);
 +
 +              if (S_ISREG(mode)) {
 +                      int fd;
 +                      if (mkdir_p(path, 0777))
 +                              die("failed to create path %s: %s", path, strerror(errno));
 +                      unlink(path);
 +                      if (mode & 0100)
 +                              mode = 0777;
 +                      else
 +                              mode = 0666;
 +                      fd = open(path, O_WRONLY | O_TRUNC | O_CREAT, mode);
 +                      if (fd < 0)
 +                              die("failed to open %s: %s", path, strerror(errno));
 +                      flush_buffer(fd, buf, size);
 +                      close(fd);
 +              } else if (S_ISLNK(mode)) {
 +                      char *lnk = malloc(size + 1);
 +                      memcpy(lnk, buf, size);
 +                      lnk[size] = '\0';
 +                      mkdir_p(path, 0777);
 +                      unlink(lnk);
 +                      symlink(lnk, path);
 +              } else
 +                      die("do not know what to do with %06o %s '%s'",
 +                          mode, sha1_to_hex(sha), path);
 +      }
 +      if (update_cache)
 +              add_cacheinfo(mode, sha, path, 0, update_wd, ADD_CACHE_OK_TO_ADD);
 +}
 +
 +void update_file(int clean,
 +              const unsigned char *sha,
 +              unsigned mode,
 +              const char *path)
 +{
 +      update_file_flags(sha, mode, path, index_only || clean, !index_only);
 +}
 +
 +/* Low level file merging, update and removal */
 +
 +struct merge_file_info
 +{
 +      unsigned char sha[20];
 +      unsigned mode;
 +      unsigned clean:1,
 +               merge:1;
 +};
 +
 +static char *git_unpack_file(const unsigned char *sha1, char *path)
 +{
 +      void *buf;
 +      char type[20];
 +      unsigned long size;
 +      int fd;
 +
 +      buf = read_sha1_file(sha1, type, &size);
 +      if (!buf || strcmp(type, blob_type))
 +              die("unable to read blob object %s", sha1_to_hex(sha1));
 +
 +      strcpy(path, ".merge_file_XXXXXX");
 +      fd = mkstemp(path);
 +      if (fd < 0)
 +              die("unable to create temp-file");
 +      flush_buffer(fd, buf, size);
 +      close(fd);
 +      return path;
 +}
 +
 +static struct merge_file_info merge_file(struct diff_filespec *o,
 +              struct diff_filespec *a, struct diff_filespec *b,
 +              const char *branch1, const char *branch2)
 +{
 +      struct merge_file_info result;
 +      result.merge = 0;
 +      result.clean = 1;
 +
 +      if ((S_IFMT & a->mode) != (S_IFMT & b->mode)) {
 +              result.clean = 0;
 +              if (S_ISREG(a->mode)) {
 +                      result.mode = a->mode;
 +                      memcpy(result.sha, a->sha1, 20);
 +              } else {
 +                      result.mode = b->mode;
 +                      memcpy(result.sha, b->sha1, 20);
 +              }
 +      } else {
 +              if (!sha_eq(a->sha1, o->sha1) && !sha_eq(b->sha1, o->sha1))
 +                      result.merge = 1;
 +
 +              result.mode = a->mode == o->mode ? b->mode: a->mode;
 +
 +              if (sha_eq(a->sha1, o->sha1))
 +                      memcpy(result.sha, b->sha1, 20);
 +              else if (sha_eq(b->sha1, o->sha1))
 +                      memcpy(result.sha, a->sha1, 20);
 +              else if (S_ISREG(a->mode)) {
 +                      int code = 1, fd;
 +                      struct stat st;
 +                      char orig[PATH_MAX];
 +                      char src1[PATH_MAX];
 +                      char src2[PATH_MAX];
 +                      const char *argv[] = {
 +                              "merge", "-L", NULL, "-L", NULL, "-L", NULL,
 +                              NULL, NULL, NULL,
 +                              NULL
 +                      };
 +                      char *la, *lb, *lo;
 +
 +                      git_unpack_file(o->sha1, orig);
 +                      git_unpack_file(a->sha1, src1);
 +                      git_unpack_file(b->sha1, src2);
 +
 +                      argv[2] = la = strdup(mkpath("%s/%s", branch1, a->path));
 +                      argv[6] = lb = strdup(mkpath("%s/%s", branch2, b->path));
 +                      argv[4] = lo = strdup(mkpath("orig/%s", o->path));
 +                      argv[7] = src1;
 +                      argv[8] = orig;
 +                      argv[9] = src2,
 +
 +                      code = run_command_v(10, argv);
 +
 +                      free(la);
 +                      free(lb);
 +                      free(lo);
 +                      if (code && code < -256) {
 +                              die("Failed to execute 'merge'. merge(1) is used as the "
 +                                  "file-level merge tool. Is 'merge' in your path?");
 +                      }
 +                      fd = open(src1, O_RDONLY);
 +                      if (fd < 0 || fstat(fd, &st) < 0 ||
 +                                      index_fd(result.sha, fd, &st, 1,
 +                                              "blob"))
 +                              die("Unable to add %s to database", src1);
 +
 +                      unlink(orig);
 +                      unlink(src1);
 +                      unlink(src2);
 +
 +                      result.clean = WEXITSTATUS(code) == 0;
 +              } else {
 +                      if (!(S_ISLNK(a->mode) || S_ISLNK(b->mode)))
 +                              die("cannot merge modes?");
 +
 +                      memcpy(result.sha, a->sha1, 20);
 +
 +                      if (!sha_eq(a->sha1, b->sha1))
 +                              result.clean = 0;
 +              }
 +      }
 +
 +      return result;
 +}
 +
 +static void conflict_rename_rename(struct rename *ren1,
 +                                 const char *branch1,
 +                                 struct rename *ren2,
 +                                 const char *branch2)
 +{
 +      char *del[2];
 +      int delp = 0;
 +      const char *ren1_dst = ren1->pair->two->path;
 +      const char *ren2_dst = ren2->pair->two->path;
 +      const char *dst_name1 = ren1_dst;
 +      const char *dst_name2 = ren2_dst;
 +      if (path_list_has_path(&current_directory_set, ren1_dst)) {
 +              dst_name1 = del[delp++] = unique_path(ren1_dst, branch1);
 +              output("%s is a directory in %s adding as %s instead",
 +                     ren1_dst, branch2, dst_name1);
 +              remove_file(0, ren1_dst);
 +      }
 +      if (path_list_has_path(&current_directory_set, ren2_dst)) {
 +              dst_name2 = del[delp++] = unique_path(ren2_dst, branch2);
 +              output("%s is a directory in %s adding as %s instead",
 +                     ren2_dst, branch1, dst_name2);
 +              remove_file(0, ren2_dst);
 +      }
 +      update_stages(dst_name1, NULL, ren1->pair->two, NULL, 1);
 +      update_stages(dst_name2, NULL, NULL, ren2->pair->two, 1);
 +      while (delp--)
 +              free(del[delp]);
 +}
 +
 +static void conflict_rename_dir(struct rename *ren1,
 +                              const char *branch1)
 +{
 +      char *new_path = unique_path(ren1->pair->two->path, branch1);
 +      output("Renaming %s to %s instead", ren1->pair->one->path, new_path);
 +      remove_file(0, ren1->pair->two->path);
 +      update_file(0, ren1->pair->two->sha1, ren1->pair->two->mode, new_path);
 +      free(new_path);
 +}
 +
 +static void conflict_rename_rename_2(struct rename *ren1,
 +                                   const char *branch1,
 +                                   struct rename *ren2,
 +                                   const char *branch2)
 +{
 +      char *new_path1 = unique_path(ren1->pair->two->path, branch1);
 +      char *new_path2 = unique_path(ren2->pair->two->path, branch2);
 +      output("Renaming %s to %s and %s to %s instead",
 +             ren1->pair->one->path, new_path1,
 +             ren2->pair->one->path, new_path2);
 +      remove_file(0, ren1->pair->two->path);
 +      update_file(0, ren1->pair->two->sha1, ren1->pair->two->mode, new_path1);
 +      update_file(0, ren2->pair->two->sha1, ren2->pair->two->mode, new_path2);
 +      free(new_path2);
 +      free(new_path1);
 +}
 +
 +static int process_renames(struct path_list *a_renames,
 +                         struct path_list *b_renames,
 +                         const char *a_branch,
 +                         const char *b_branch)
 +{
 +      int clean_merge = 1, i, j;
 +      struct path_list a_by_dst = {NULL, 0, 0, 0}, b_by_dst = {NULL, 0, 0, 0};
 +      const struct rename *sre;
 +
 +      for (i = 0; i < a_renames->nr; i++) {
 +              sre = a_renames->items[i].util;
 +              path_list_insert(sre->pair->two->path, &a_by_dst)->util
 +                      = sre->dst_entry;
 +      }
 +      for (i = 0; i < b_renames->nr; i++) {
 +              sre = b_renames->items[i].util;
 +              path_list_insert(sre->pair->two->path, &b_by_dst)->util
 +                      = sre->dst_entry;
 +      }
 +
 +      for (i = 0, j = 0; i < a_renames->nr || j < b_renames->nr;) {
 +              int compare;
 +              char *src;
 +              struct path_list *renames1, *renames2, *renames2Dst;
 +              struct rename *ren1 = NULL, *ren2 = NULL;
 +              const char *branch1, *branch2;
 +              const char *ren1_src, *ren1_dst;
 +
 +              if (i >= a_renames->nr) {
 +                      compare = 1;
 +                      ren2 = b_renames->items[j++].util;
 +              } else if (j >= b_renames->nr) {
 +                      compare = -1;
 +                      ren1 = a_renames->items[i++].util;
 +              } else {
 +                      compare = strcmp(a_renames->items[i].path,
 +                                      b_renames->items[j].path);
 +                      if (compare <= 0)
 +                              ren1 = a_renames->items[i++].util;
 +                      if (compare >= 0)
 +                              ren2 = b_renames->items[j++].util;
 +              }
 +
 +              /* TODO: refactor, so that 1/2 are not needed */
 +              if (ren1) {
 +                      renames1 = a_renames;
 +                      renames2 = b_renames;
 +                      renames2Dst = &b_by_dst;
 +                      branch1 = a_branch;
 +                      branch2 = b_branch;
 +              } else {
 +                      struct rename *tmp;
 +                      renames1 = b_renames;
 +                      renames2 = a_renames;
 +                      renames2Dst = &a_by_dst;
 +                      branch1 = b_branch;
 +                      branch2 = a_branch;
 +                      tmp = ren2;
 +                      ren2 = ren1;
 +                      ren1 = tmp;
 +              }
 +              src = ren1->pair->one->path;
 +
 +              ren1->dst_entry->processed = 1;
 +              ren1->src_entry->processed = 1;
 +
 +              if (ren1->processed)
 +                      continue;
 +              ren1->processed = 1;
 +
 +              ren1_src = ren1->pair->one->path;
 +              ren1_dst = ren1->pair->two->path;
 +
 +              if (ren2) {
 +                      const char *ren2_src = ren2->pair->one->path;
 +                      const char *ren2_dst = ren2->pair->two->path;
 +                      /* Renamed in 1 and renamed in 2 */
 +                      if (strcmp(ren1_src, ren2_src) != 0)
 +                              die("ren1.src != ren2.src");
 +                      ren2->dst_entry->processed = 1;
 +                      ren2->processed = 1;
 +                      if (strcmp(ren1_dst, ren2_dst) != 0) {
 +                              clean_merge = 0;
 +                              output("CONFLICT (rename/rename): "
 +                                     "Rename %s->%s in branch %s "
 +                                     "rename %s->%s in %s",
 +                                     src, ren1_dst, branch1,
 +                                     src, ren2_dst, branch2);
 +                              conflict_rename_rename(ren1, branch1, ren2, branch2);
 +                      } else {
 +                              struct merge_file_info mfi;
 +                              remove_file(1, ren1_src);
 +                              mfi = merge_file(ren1->pair->one,
 +                                               ren1->pair->two,
 +                                               ren2->pair->two,
 +                                               branch1,
 +                                               branch2);
 +                              if (mfi.merge || !mfi.clean)
 +                                      output("Renaming %s->%s", src, ren1_dst);
 +
 +                              if (mfi.merge)
 +                                      output("Auto-merging %s", ren1_dst);
 +
 +                              if (!mfi.clean) {
 +                                      output("CONFLICT (content): merge conflict in %s",
 +                                             ren1_dst);
 +                                      clean_merge = 0;
 +
 +                                      if (!index_only)
 +                                              update_stages(ren1_dst,
 +                                                            ren1->pair->one,
 +                                                            ren1->pair->two,
 +                                                            ren2->pair->two,
 +                                                            1 /* clear */);
 +                              }
 +                              update_file(mfi.clean, mfi.sha, mfi.mode, ren1_dst);
 +                      }
 +              } else {
 +                      /* Renamed in 1, maybe changed in 2 */
 +                      struct path_list_item *item;
 +                      /* we only use sha1 and mode of these */
 +                      struct diff_filespec src_other, dst_other;
 +                      int try_merge, stage = a_renames == renames1 ? 3: 2;
 +
 +                      remove_file(1, ren1_src);
 +
 +                      memcpy(src_other.sha1,
 +                                      ren1->src_entry->stages[stage].sha, 20);
 +                      src_other.mode = ren1->src_entry->stages[stage].mode;
 +                      memcpy(dst_other.sha1,
 +                                      ren1->dst_entry->stages[stage].sha, 20);
 +                      dst_other.mode = ren1->dst_entry->stages[stage].mode;
 +
 +                      try_merge = 0;
 +
 +                      if (path_list_has_path(&current_directory_set, ren1_dst)) {
 +                              clean_merge = 0;
 +                              output("CONFLICT (rename/directory): Rename %s->%s in %s "
 +                                     " directory %s added in %s",
 +                                     ren1_src, ren1_dst, branch1,
 +                                     ren1_dst, branch2);
 +                              conflict_rename_dir(ren1, branch1);
 +                      } else if (sha_eq(src_other.sha1, null_sha1)) {
 +                              clean_merge = 0;
 +                              output("CONFLICT (rename/delete): Rename %s->%s in %s "
 +                                     "and deleted in %s",
 +                                     ren1_src, ren1_dst, branch1,
 +                                     branch2);
 +                              update_file(0, ren1->pair->two->sha1, ren1->pair->two->mode, ren1_dst);
 +                      } else if (!sha_eq(dst_other.sha1, null_sha1)) {
 +                              const char *new_path;
 +                              clean_merge = 0;
 +                              try_merge = 1;
 +                              output("CONFLICT (rename/add): Rename %s->%s in %s. "
 +                                     "%s added in %s",
 +                                     ren1_src, ren1_dst, branch1,
 +                                     ren1_dst, branch2);
 +                              new_path = unique_path(ren1_dst, branch2);
 +                              output("Adding as %s instead", new_path);
 +                              update_file(0, dst_other.sha1, dst_other.mode, new_path);
 +                      } else if ((item = path_list_lookup(ren1_dst, renames2Dst))) {
 +                              ren2 = item->util;
 +                              clean_merge = 0;
 +                              ren2->processed = 1;
 +                              output("CONFLICT (rename/rename): Rename %s->%s in %s. "
 +                                     "Rename %s->%s in %s",
 +                                     ren1_src, ren1_dst, branch1,
 +                                     ren2->pair->one->path, ren2->pair->two->path, branch2);
 +                              conflict_rename_rename_2(ren1, branch1, ren2, branch2);
 +                      } else
 +                              try_merge = 1;
 +
 +                      if (try_merge) {
 +                              struct diff_filespec *o, *a, *b;
 +                              struct merge_file_info mfi;
 +                              src_other.path = (char *)ren1_src;
 +
 +                              o = ren1->pair->one;
 +                              if (a_renames == renames1) {
 +                                      a = ren1->pair->two;
 +                                      b = &src_other;
 +                              } else {
 +                                      b = ren1->pair->two;
 +                                      a = &src_other;
 +                              }
 +                              mfi = merge_file(o, a, b,
 +                                              a_branch, b_branch);
 +
 +                              if (mfi.merge || !mfi.clean)
 +                                      output("Renaming %s => %s", ren1_src, ren1_dst);
 +                              if (mfi.merge)
 +                                      output("Auto-merging %s", ren1_dst);
 +                              if (!mfi.clean) {
 +                                      output("CONFLICT (rename/modify): Merge conflict in %s",
 +                                             ren1_dst);
 +                                      clean_merge = 0;
 +
 +                                      if (!index_only)
 +                                              update_stages(ren1_dst,
 +                                                              o, a, b, 1);
 +                              }
 +                              update_file(mfi.clean, mfi.sha, mfi.mode, ren1_dst);
 +                      }
 +              }
 +      }
 +      path_list_clear(&a_by_dst, 0);
 +      path_list_clear(&b_by_dst, 0);
 +
 +      if (cache_dirty)
 +              flush_cache();
 +      return clean_merge;
 +}
 +
 +static unsigned char *has_sha(const unsigned char *sha)
 +{
 +      return memcmp(sha, null_sha1, 20) == 0 ? NULL: (unsigned char *)sha;
 +}
 +
 +/* Per entry merge function */
 +static int process_entry(const char *path, struct stage_data *entry,
 +                       const char *branch1,
 +                       const char *branch2)
 +{
 +      /*
 +      printf("processing entry, clean cache: %s\n", index_only ? "yes": "no");
 +      print_index_entry("\tpath: ", entry);
 +      */
 +      int clean_merge = 1;
 +      unsigned char *o_sha = has_sha(entry->stages[1].sha);
 +      unsigned char *a_sha = has_sha(entry->stages[2].sha);
 +      unsigned char *b_sha = has_sha(entry->stages[3].sha);
 +      unsigned o_mode = entry->stages[1].mode;
 +      unsigned a_mode = entry->stages[2].mode;
 +      unsigned b_mode = entry->stages[3].mode;
 +
 +      if (o_sha && (!a_sha || !b_sha)) {
 +              /* Case A: Deleted in one */
 +              if ((!a_sha && !b_sha) ||
 +                  (sha_eq(a_sha, o_sha) && !b_sha) ||
 +                  (!a_sha && sha_eq(b_sha, o_sha))) {
 +                      /* Deleted in both or deleted in one and
 +                       * unchanged in the other */
 +                      if (a_sha)
 +                              output("Removing %s", path);
 +                      remove_file(1, path);
 +              } else {
 +                      /* Deleted in one and changed in the other */
 +                      clean_merge = 0;
 +                      if (!a_sha) {
 +                              output("CONFLICT (delete/modify): %s deleted in %s "
 +                                     "and modified in %s. Version %s of %s left in tree.",
 +                                     path, branch1,
 +                                     branch2, branch2, path);
 +                              update_file(0, b_sha, b_mode, path);
 +                      } else {
 +                              output("CONFLICT (delete/modify): %s deleted in %s "
 +                                     "and modified in %s. Version %s of %s left in tree.",
 +                                     path, branch2,
 +                                     branch1, branch1, path);
 +                              update_file(0, a_sha, a_mode, path);
 +                      }
 +              }
 +
 +      } else if ((!o_sha && a_sha && !b_sha) ||
 +                 (!o_sha && !a_sha && b_sha)) {
 +              /* Case B: Added in one. */
 +              const char *add_branch;
 +              const char *other_branch;
 +              unsigned mode;
 +              const unsigned char *sha;
 +              const char *conf;
 +
 +              if (a_sha) {
 +                      add_branch = branch1;
 +                      other_branch = branch2;
 +                      mode = a_mode;
 +                      sha = a_sha;
 +                      conf = "file/directory";
 +              } else {
 +                      add_branch = branch2;
 +                      other_branch = branch1;
 +                      mode = b_mode;
 +                      sha = b_sha;
 +                      conf = "directory/file";
 +              }
 +              if (path_list_has_path(&current_directory_set, path)) {
 +                      const char *new_path = unique_path(path, add_branch);
 +                      clean_merge = 0;
 +                      output("CONFLICT (%s): There is a directory with name %s in %s. "
 +                             "Adding %s as %s",
 +                             conf, path, other_branch, path, new_path);
 +                      remove_file(0, path);
 +                      update_file(0, sha, mode, new_path);
 +              } else {
 +                      output("Adding %s", path);
 +                      update_file(1, sha, mode, path);
 +              }
 +      } else if (!o_sha && a_sha && b_sha) {
 +              /* Case C: Added in both (check for same permissions). */
 +              if (sha_eq(a_sha, b_sha)) {
 +                      if (a_mode != b_mode) {
 +                              clean_merge = 0;
 +                              output("CONFLICT: File %s added identically in both branches, "
 +                                     "but permissions conflict %06o->%06o",
 +                                     path, a_mode, b_mode);
 +                              output("CONFLICT: adding with permission: %06o", a_mode);
 +                              update_file(0, a_sha, a_mode, path);
 +                      } else {
 +                              /* This case is handled by git-read-tree */
 +                              assert(0 && "This case must be handled by git-read-tree");
 +                      }
 +              } else {
 +                      const char *new_path1, *new_path2;
 +                      clean_merge = 0;
 +                      new_path1 = unique_path(path, branch1);
 +                      new_path2 = unique_path(path, branch2);
 +                      output("CONFLICT (add/add): File %s added non-identically "
 +                             "in both branches. Adding as %s and %s instead.",
 +                             path, new_path1, new_path2);
 +                      remove_file(0, path);
 +                      update_file(0, a_sha, a_mode, new_path1);
 +                      update_file(0, b_sha, b_mode, new_path2);
 +              }
 +
 +      } else if (o_sha && a_sha && b_sha) {
 +              /* case D: Modified in both, but differently. */
 +              struct merge_file_info mfi;
 +              struct diff_filespec o, a, b;
 +
 +              output("Auto-merging %s", path);
 +              o.path = a.path = b.path = (char *)path;
 +              memcpy(o.sha1, o_sha, 20);
 +              o.mode = o_mode;
 +              memcpy(a.sha1, a_sha, 20);
 +              a.mode = a_mode;
 +              memcpy(b.sha1, b_sha, 20);
 +              b.mode = b_mode;
 +
 +              mfi = merge_file(&o, &a, &b,
 +                               branch1, branch2);
 +
 +              if (mfi.clean)
 +                      update_file(1, mfi.sha, mfi.mode, path);
 +              else {
 +                      clean_merge = 0;
 +                      output("CONFLICT (content): Merge conflict in %s", path);
 +
 +                      if (index_only)
 +                              update_file(0, mfi.sha, mfi.mode, path);
 +                      else
 +                              update_file_flags(mfi.sha, mfi.mode, path,
 +                                            0 /* update_cache */, 1 /* update_working_directory */);
 +              }
 +      } else
 +              die("Fatal merge failure, shouldn't happen.");
 +
 +      if (cache_dirty)
 +              flush_cache();
 +
 +      return clean_merge;
 +}
 +
 +static int merge_trees(struct tree *head,
 +                     struct tree *merge,
 +                     struct tree *common,
 +                     const char *branch1,
 +                     const char *branch2,
 +                     struct tree **result)
 +{
 +      int code, clean;
 +      if (sha_eq(common->object.sha1, merge->object.sha1)) {
 +              output("Already uptodate!");
 +              *result = head;
 +              return 1;
 +      }
 +
 +      code = git_merge_trees(index_only, common, head, merge);
 +
 +      if (code != 0)
 +              die("merging of trees %s and %s failed",
 +                  sha1_to_hex(head->object.sha1),
 +                  sha1_to_hex(merge->object.sha1));
 +
 +      *result = git_write_tree();
 +
 +      if (!*result) {
 +              struct path_list *entries, *re_head, *re_merge;
 +              int i;
 +              path_list_clear(&current_file_set, 1);
 +              path_list_clear(&current_directory_set, 1);
 +              get_files_dirs(head);
 +              get_files_dirs(merge);
 +
 +              entries = get_unmerged();
 +              re_head  = get_renames(head, common, head, merge, entries);
 +              re_merge = get_renames(merge, common, head, merge, entries);
 +              clean = process_renames(re_head, re_merge,
 +                              branch1, branch2);
 +              for (i = 0; i < entries->nr; i++) {
 +                      const char *path = entries->items[i].path;
 +                      struct stage_data *e = entries->items[i].util;
 +                      if (e->processed)
 +                              continue;
 +                      if (!process_entry(path, e, branch1, branch2))
 +                              clean = 0;
 +              }
 +
 +              path_list_clear(re_merge, 0);
 +              path_list_clear(re_head, 0);
 +              path_list_clear(entries, 1);
 +
 +              if (clean || index_only)
 +                      *result = git_write_tree();
 +              else
 +                      *result = NULL;
 +      } else {
 +              clean = 1;
 +              printf("merging of trees %s and %s resulted in %s\n",
 +                     sha1_to_hex(head->object.sha1),
 +                     sha1_to_hex(merge->object.sha1),
 +                     sha1_to_hex((*result)->object.sha1));
 +      }
 +
 +      return clean;
 +}
 +
 +static struct commit_list *reverse_commit_list(struct commit_list *list)
 +{
 +      struct commit_list *next = NULL, *current, *backup;
 +      for (current = list; current; current = backup) {
 +              backup = current->next;
 +              current->next = next;
 +              next = current;
 +      }
 +      return next;
 +}
 +
 +/*
 + * Merge the commits h1 and h2, return the resulting virtual
 + * commit object and a flag indicating the cleaness of the merge.
 + */
 +static
 +int merge(struct commit *h1,
 +                        struct commit *h2,
 +                        const char *branch1,
 +                        const char *branch2,
 +                        int call_depth /* =0 */,
 +                        struct commit *ancestor /* =None */,
 +                        struct commit **result)
 +{
 +      struct commit_list *ca = NULL, *iter;
 +      struct commit *merged_common_ancestors;
 +      struct tree *mrtree;
 +      int clean;
 +
 +      output("Merging:");
 +      output_commit_title(h1);
 +      output_commit_title(h2);
 +
 +      if (ancestor)
 +              commit_list_insert(ancestor, &ca);
 +      else
 +              ca = reverse_commit_list(get_merge_bases(h1, h2, 1));
 +
 +      output("found %u common ancestor(s):", commit_list_count(ca));
 +      for (iter = ca; iter; iter = iter->next)
 +              output_commit_title(iter->item);
 +
 +      merged_common_ancestors = pop_commit(&ca);
 +      if (merged_common_ancestors == NULL) {
 +              /* if there is no common ancestor, make an empty tree */
 +              struct tree *tree = xcalloc(1, sizeof(struct tree));
 +              unsigned char hdr[40];
 +              int hdrlen;
 +
 +              tree->object.parsed = 1;
 +              tree->object.type = OBJ_TREE;
 +              write_sha1_file_prepare(NULL, 0, tree_type, tree->object.sha1,
 +                                      hdr, &hdrlen);
 +              merged_common_ancestors = make_virtual_commit(tree, "ancestor");
 +      }
 +
 +      for (iter = ca; iter; iter = iter->next) {
 +              output_indent = call_depth + 1;
 +              /*
 +               * When the merge fails, the result contains files
 +               * with conflict markers. The cleanness flag is
 +               * ignored, it was never acutally used, as result of
 +               * merge_trees has always overwritten it: the commited
 +               * "conflicts" were already resolved.
 +               */
 +              merge(merged_common_ancestors, iter->item,
 +                    "Temporary merge branch 1",
 +                    "Temporary merge branch 2",
 +                    call_depth + 1,
 +                    NULL,
 +                    &merged_common_ancestors);
 +              output_indent = call_depth;
 +
 +              if (!merged_common_ancestors)
 +                      die("merge returned no commit");
 +      }
 +
 +      if (call_depth == 0) {
 +              setup_index(0 /* $GIT_DIR/index */);
 +              index_only = 0;
 +      } else {
 +              setup_index(1 /* temporary index */);
 +              git_read_tree(h1->tree);
 +              index_only = 1;
 +      }
 +
 +      clean = merge_trees(h1->tree, h2->tree, merged_common_ancestors->tree,
 +                          branch1, branch2, &mrtree);
 +
 +      if (!ancestor && (clean || index_only)) {
 +              *result = make_virtual_commit(mrtree, "merged tree");
 +              commit_list_insert(h1, &(*result)->parents);
 +              commit_list_insert(h2, &(*result)->parents->next);
 +      } else
 +              *result = NULL;
 +
 +      return clean;
 +}
 +
 +static struct commit *get_ref(const char *ref)
 +{
 +      unsigned char sha1[20];
 +      struct object *object;
 +
 +      if (get_sha1(ref, sha1))
 +              die("Could not resolve ref '%s'", ref);
 +      object = deref_tag(parse_object(sha1), ref, strlen(ref));
 +      if (object->type != OBJ_COMMIT)
 +              return NULL;
 +      if (parse_commit((struct commit *)object))
 +              die("Could not parse commit '%s'", sha1_to_hex(object->sha1));
 +      return (struct commit *)object;
 +}
 +
 +int main(int argc, char *argv[])
 +{
 +      static const char *bases[2];
 +      static unsigned bases_count = 0;
 +      int i, clean;
 +      const char *branch1, *branch2;
 +      struct commit *result, *h1, *h2;
 +
 +      original_index_file = getenv("GIT_INDEX_FILE");
 +
 +      if (!original_index_file)
 +              original_index_file = strdup(git_path("index"));
 +
 +      temporary_index_file = strdup(git_path("mrg-rcrsv-tmp-idx"));
 +
 +      if (argc < 4)
 +              die("Usage: %s <base>... -- <head> <remote> ...\n", argv[0]);
 +
 +      for (i = 1; i < argc; ++i) {
 +              if (!strcmp(argv[i], "--"))
 +                      break;
 +              if (bases_count < sizeof(bases)/sizeof(*bases))
 +                      bases[bases_count++] = argv[i];
 +      }
 +      if (argc - i != 3) /* "--" "<head>" "<remote>" */
 +              die("Not handling anything other than two heads merge.");
 +
 +      branch1 = argv[++i];
 +      branch2 = argv[++i];
 +      printf("Merging %s with %s\n", branch1, branch2);
 +
 +      h1 = get_ref(branch1);
 +      h2 = get_ref(branch2);
 +
 +      if (bases_count == 1) {
 +              struct commit *ancestor = get_ref(bases[0]);
 +              clean = merge(h1, h2, branch1, branch2, 0, ancestor, &result);
 +      } else
 +              clean = merge(h1, h2, branch1, branch2, 0, NULL, &result);
 +
 +      if (cache_dirty)
 +              flush_cache();
 +
 +      return clean ? 0: 1;
 +}
 +
 +/*
 +vim: sw=8 noet
 +*/
diff --combined read-cache.c
index fc2af2cb0473d7c18e554224df1ae233dba63392,f92cdaacee1b43bf09929e7072c281dbcbb09c10..c575edac498698e969a057ce24cbb4821ad57b3a
@@@ -61,7 -61,7 +61,7 @@@ static int ce_compare_data(struct cache
                unsigned char sha1[20];
                if (!index_fd(sha1, fd, st, 0, NULL))
                        match = memcmp(sha1, ce->sha1, 20);
-               close(fd);
+               /* index_fd() closed the file descriptor already */
        }
        return match;
  }
@@@ -836,23 -836,6 +836,23 @@@ unmap
        die("index file corrupt");
  }
  
 +int discard_cache()
 +{
 +      int ret;
 +
 +      active_nr = active_cache_changed = 0;
 +      index_file_timestamp = 0;
 +      cache_tree_free(&active_cache_tree);
 +      if (cache_mmap == NULL)
 +              return 0;
 +      ret = munmap(cache_mmap, cache_mmap_size);
 +      cache_mmap = NULL;
 +      cache_mmap_size = 0;
 +
 +      /* no need to throw away allocated active_cache */
 +      return ret;
 +}
 +
  #define WRITE_BUFFER_SIZE 8192
  static unsigned char write_buffer[WRITE_BUFFER_SIZE];
  static unsigned long write_buffer_len;